| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8115 |
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| Symbol | xerC |
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| ID | 7365205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 79742 |
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| End bp | 80680 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643641742 |
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| Product | site-specific tyrosine recombinase XerC |
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| Protein accession | YP_002540039 |
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| Protein GI | 222080176 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00832586 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGGCCGGGG AGGTCGCCAT GCTGACCGAC GATGCTGATC GCTATATCGC ATTGCGCCGC
TCGCTCGGCT TCAAACTGGC AAAGACGTCT CGGCACCTGG CTGCGTTCGC GTGCTATGCG
GTTGACCACG GCGATATCCA TGTTCGCCAC GAGACCGCGA TCGCATGGGC GGCGACCGTC
TCGTCGACCC CGCGCAGTCA CCAGCGGCGG CTTGGCGAGA TCGCTCTCTT CGCACGCTTC
CTGCATGCCG AGGATCGCGC CCATGAAGTG CCGCACCATC ATCCCGACCC TGGTGCTGCA
AAACGTCCCG CGCCCTATAT CTACACATCT GCGGAACTGG CGCGCATGCT CGATGCCGCG
GGCAATCTGC GGCACCAGAA GCCCAGCCCG CTCAGGCGCC ACATCTATGT GATGCTGGTT
GGGCTGCTGG CGTCGACGGG CCTGCGGATA TCGGAGGCTC TGAACCTGAG GTTGGACGAT
GCGCTGCCAG ATGGCGTGCT GCACATCCGG CAGACCAAGT TCAACAAGAG CCGGCTGGTG
CCGATGCACG CCAGCGTGGT CGAGGCGCTG CGGGCCTATC TTGAGGTCCG TCGGCGGTTC
GCCGGGGCGG ACGACCATGT GTTCCTCTCG GTGGATGCCA AGCCGATGCC CCTTCGAACC
GTCGAGAGCA CCTTCCATGT GATCCTGCGC AAGGCTGGCG TCGGTCAGGA TCGGTCGCGT
CGCCCGCGTA TCCATGATCT GCGCCACACC TTCGCGACCC GTGCGCTGGA GCAATGTGCG
ATGCGCCGGG ATGATGTTGC GCGGGACTTC GTCGCACTCT CCACCTATCT TGGCCACGCG
AGTATCCGGC ATACCTACTG GTATCTGGAA GCCACGCCCG ACCTCATGGG CGATATCGCG
GCGGCTGCCG AGGCGCTGAT CGAGGGAGAG ATCGCATGA
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| Protein sequence | MAGEVAMLTD DADRYIALRR SLGFKLAKTS RHLAAFACYA VDHGDIHVRH ETAIAWAATV
SSTPRSHQRR LGEIALFARF LHAEDRAHEV PHHHPDPGAA KRPAPYIYTS AELARMLDAA
GNLRHQKPSP LRRHIYVMLV GLLASTGLRI SEALNLRLDD ALPDGVLHIR QTKFNKSRLV
PMHASVVEAL RAYLEVRRRF AGADDHVFLS VDAKPMPLRT VESTFHVILR KAGVGQDRSR
RPRIHDLRHT FATRALEQCA MRRDDVARDF VALSTYLGHA SIRHTYWYLE ATPDLMGDIA
AAAEALIEGE IA
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