| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8114 |
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| Symbol | |
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| ID | 7365204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 78540 |
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| End bp | 79766 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643641741 |
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| Product | integrase/recombinase |
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| Protein accession | YP_002540038 |
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| Protein GI | 222080175 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.200175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACGG GTGTTTATGT TCGGAAGAAC GCGGTCGGGG ACCGCTTGAA GGCGGGAATG
GCTGCGGACC ACGCGGCGGA CTTCGCGCAA TGGCTTCGTG AGCGACGCTA TACGCCACGT
ACCATCATCG AGAAGATGCG GCTGCTTGCG AGCTGGACGC ACTGGGCATG CGCGGAGAAT
TACACGCTCG CCGCGATCCG TGAGGCGCAT GCGACATCGT TCGCCTTAAT TGCAGCGGGG
CAATGCCCGC GCTTCCGTGG CGACATCAAC CAGGATGCGG TCGAGATCGC CAAGCTGTTC
ATCGCCTATC TCGAGGATCG CAGCGTATTG GTGGGCCCGC CGGCCAAGCC GGTTGCGCCG
CTGGTGGCCG AGTTTGCGGC TTGGGCCCGC GAGCAGCGCG GTCTGGCCGA AACGACGCTG
GCCACGTATC TCGGAACAAT CACACCCTTC ATCGATACGC TGGGGGACAC GCCAGCTATC
TACGACGCCG CAACGATCCG AGCCTACATG ATCGAGCGCG CGAAAGCAGT ATCGGTGGCG
CGGATGAAGG GGATATCGGT CGGCATTCGC GCCTTCCTGC GCTTCCTGAT CGCGACAGGA
CGATGCCGGC CCGGACTCGA CCACGCCATG CCCAACGTTG CGGGCTGGCG GCTGGCCTCG
ATCCCGCGCT TTCTGCCCGA TGCCGATATC GCGCGGATCA TCGGGGCGTG CAACGGTGAG
CGTCGCCTGC GCGACCGGGC CATCATCCTG CTGTTGGTTC GGCTCGGACT TCGGGCGAGC
GAGGTCGCAC GGCTCGGCTT CGGCGATATC GACTGGCGGC AGGGCAGCAT CCGCCTGTTC
GGCAAAGGCC GGCGCGAAGA ACTGCTGCCA CTCACCCAGG AGATCGGCGA CGCGCTGCTT
GCCTATATCG AACGCGGTCG GCCGGCGCTG GCGGTACCAT CCCTGTTCAT TACCGAATAT
GCGCCGCTGC GCCCCATCGA CCGCATCACG GTCAAATGCC TGGTCAAGCG CGCCCTCAAA
CGCGGCGGTG TCGAAAGCCA TTACAAGGGG GCACATATCC TGCGGCACTC GGCGGCTACG
GCGATGCTCC GCCACGGCGT CAGCTTAGCC CATGTTGGCA CTGTGCTGCG TCACCGGTCG
CCGGAGATGA CTGCGCATTA CGCCAAGGTC GATATCGCAC TTCTGTCGGC CATCGCTCAG
TCCTGGCCGG GGAGGTCGCC ATGCTGA
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| Protein sequence | MPTGVYVRKN AVGDRLKAGM AADHAADFAQ WLRERRYTPR TIIEKMRLLA SWTHWACAEN
YTLAAIREAH ATSFALIAAG QCPRFRGDIN QDAVEIAKLF IAYLEDRSVL VGPPAKPVAP
LVAEFAAWAR EQRGLAETTL ATYLGTITPF IDTLGDTPAI YDAATIRAYM IERAKAVSVA
RMKGISVGIR AFLRFLIATG RCRPGLDHAM PNVAGWRLAS IPRFLPDADI ARIIGACNGE
RRLRDRAIIL LLVRLGLRAS EVARLGFGDI DWRQGSIRLF GKGRREELLP LTQEIGDALL
AYIERGRPAL AVPSLFITEY APLRPIDRIT VKCLVKRALK RGGVESHYKG AHILRHSAAT
AMLRHGVSLA HVGTVLRHRS PEMTAHYAKV DIALLSAIAQ SWPGRSPC
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