| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8068 |
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| Symbol | |
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| ID | 7365177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 45390 |
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| End bp | 47018 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641717 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002540014 |
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| Protein GI | 222080151 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACTTA TCTCGCAGAT GGTGACGAGG CAGACCGAAG CACGCCGCAA GCAGGAGGAA
CAGGGGCGGC TGCTGCGCAT GATCGACGAC ATGCCGGTAG CGGTGATGAC CGTCGAACCC
GAAGGTTTTA CGATCACCTA TGCAAACGAA ACCTCGAAAG ATCTCATCCG CAGCATCGAG
CATCTTCTGC CCCTGAAGGC CGACGGTCTC CTTGGTTCGT CTATCGATGT CTTCCATCGC
CATCCCGAGC ACGAACGACG CATCCTGTCA GACCCCAAAA ACCTGCCGCA CAATGCCCGC
ATCGATCTCG GCCCGGAAGT TTTGGACCTG AAGGTGTCCG CGATCATGGC GGATGACGAC
ACATATCTCG GGCCGATGCT GACTTGGGCG ATCGTCACAA AGGAAGTGGA AGCGGAACGG
CAAATCCGCC ACCTCGCCCA TTACGACACA CTGACCGGTC TCGCCAACCG TGTGACGTTC
AACGAGAACA TGGATTCCGC CCTTGCCCTT CCGGGCGACG GACCCGCCCT CCTGTTTATT
GATCTTGACG GCTTCAAAAT AGTGAATGAC ACCAGTGGTC ATCGTGTCGG TGACGAGTTC
GCCATTCTGG TTCCGCATGT TGAAACATCC GAACTTGAAA CTTTTGCGTC CCGTATCATT
GAAACGCTGT CTCTTCCCTA CGATCAAATC CTGATGGGTG CGTCCATCGG AATAGCTATC
GCGCCAATAC ACGGCGACAC CGGAGAATCG CTGCTGGCGC GTGCGGACAT TGCTCTTTAC
GCTGCGAAAG CGGCGGGCAA GGGGACACAC AGGACGTTTA GCGAAAATAT GGAGAGCCGG
ATACAGAAAC GGGTCCGCCT CTGTGCAAAG CTCCGGACGT CGCTTGCAAC ACGTCAGGGC
ATGTTCGTTT TCTATCAGCC GATTATTGAC GCTCACACCA AGAAGATAAC TGCACGCGAA
GCCCTTGTCC GCTGGCTTCA CCCTGAGCGG GGTTGGATTT CGCCCGCCGA ATTCGTGCCG
ATCGCTGAAG AAAGCGGGCT GATCGACCAG CTCGGCGACT TCGTTCTAAA TACCGCGTGC
CTTGATGCGG CCGGGTGGAG CGATGCTGCA CGGGTGGCGG TCAACGTATC GGCCGCGCAA
CTCGGAAAAG GAACCATCGC ATCGGCCATT CTAGCGGCAC TGACCCGTTC CGGGTTGTCC
CCTTACAGGC TGGAAATCGA AGTGACCGAA ACAGCTATGC TTTATGATGA ACATGGTGTG
ATTGGCGATT TGCGCCGCAT TCGCGACATG GGTGTTCGCG TGGCGCTGGA TGATTTCGGG
ACCGGCTATT CGTCCCTTAC CCATCTGCGC GCCTTCCCCT TCGACAAGAT CAAGATCGAT
GGCTCATTCG TGAAAGATGC CGTCGAGCGG CCGGAGTCGG CCGCGATCGT CAGGGCAATC
GCTGATCTGG GCAAGCGTCT CGGCGTCACG ACCGTTGCTG AGGGCGTAGA GACGGAAGCG
CATCTGATCC GCGTTCTTGA AGAAGGATGC ACCGAAGTTC AGGGCTATTT TTATGGCAAA
CCGGTCCCGA GCGAACGGGA TGCAGGAACG ATAGCAGAGT TGAACCATAG GAAGGTGAAA
ACAGCATGA
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| Protein sequence | MPLISQMVTR QTEARRKQEE QGRLLRMIDD MPVAVMTVEP EGFTITYANE TSKDLIRSIE
HLLPLKADGL LGSSIDVFHR HPEHERRILS DPKNLPHNAR IDLGPEVLDL KVSAIMADDD
TYLGPMLTWA IVTKEVEAER QIRHLAHYDT LTGLANRVTF NENMDSALAL PGDGPALLFI
DLDGFKIVND TSGHRVGDEF AILVPHVETS ELETFASRII ETLSLPYDQI LMGASIGIAI
APIHGDTGES LLARADIALY AAKAAGKGTH RTFSENMESR IQKRVRLCAK LRTSLATRQG
MFVFYQPIID AHTKKITARE ALVRWLHPER GWISPAEFVP IAEESGLIDQ LGDFVLNTAC
LDAAGWSDAA RVAVNVSAAQ LGKGTIASAI LAALTRSGLS PYRLEIEVTE TAMLYDEHGV
IGDLRRIRDM GVRVALDDFG TGYSSLTHLR AFPFDKIKID GSFVKDAVER PESAAIVRAI
ADLGKRLGVT TVAEGVETEA HLIRVLEEGC TEVQGYFYGK PVPSERDAGT IAELNHRKVK
TA
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