Gene Avi_8042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8042 
Symbol 
ID7365163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand- 
Start bp32520 
End bp33272 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content59% 
IMG OID643641709 
Producttranscriptional regulator AraC family 
Protein accessionYP_002540006 
Protein GI222080143 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCAGA CCGGAAAATC GAAGAACTGC GTGTGGCGCT GGCAGGAGCG CTTCGCCACA 
GAAGGCGCCG AGCGTGTGGT GGCGCTGACG CTTGCCGATC CGCCGGGCGA GACGACGCAC 
TGGACGGCCG ACATGATGGC GAAGGCCGCT GGCATCAGCG CCAGCGCAGT CGGGCGCATC 
TGGAAAGCGC ATGGCCTGGC ACCTCACCGG TGGCGGCAGT TCAAATTGTC CAACGACCCG 
AAATTCATCG ACAAGCTGCG AGACGTCGTC GGTCTCTATG TCAACTTACT GGCTGGATTG 
CGGCGCGGCG AAATAGACTT TCTGATCAGT GCGTTACGCA ATCCCCAGCC CGTCGAAGAC 
GTGGAACAGC GCCAGCTATT TACCGGCACA CTGGTGTTGC TTGCAGGAAG GACCATCCGC 
TATCGCGGCA GCATCAAATT AGCCTCGAGG AACTCGCATC TTCCCTGGGT CGTGGCTCAA 
GCGGCACGCC CATTCGCAAT CATTTTGACG CCCTGTTCGC CCGTCTCGGA CTCATGCCCG 
AAAAGCATCG GTCGAATCCG AGTCGGTCAT CCTCGTGCGC GAATTGCTGA ACCGGACGGA 
GCATCTCGGC TGTATTTCGA TGCTGCAAGC GGACGCCGAG ATGGCAAGGG TGGTAGCCTT 
CCATCATCTT CGCGTCAGGA CTTTCCTCGG GTGCGGCGCG ATCCGGTTCT TCCAAAGGAT 
AGGGAACTTA TTGCTATGTC CAGCGTTAAT TAA
 
Protein sequence
MRQTGKSKNC VWRWQERFAT EGAERVVALT LADPPGETTH WTADMMAKAA GISASAVGRI 
WKAHGLAPHR WRQFKLSNDP KFIDKLRDVV GLYVNLLAGL RRGEIDFLIS ALRNPQPVED 
VEQRQLFTGT LVLLAGRTIR YRGSIKLASR NSHLPWVVAQ AARPFAIILT PCSPVSDSCP 
KSIGRIRVGH PRARIAEPDG ASRLYFDAAS GRRDGKGGSL PSSSRQDFPR VRRDPVLPKD 
RELIAMSSVN