| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8017 |
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| Symbol | ligD |
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| ID | 7365147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | - |
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| Start bp | 15594 |
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| End bp | 18275 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643641699 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002539996 |
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| Protein GI | 222080133 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGATA ATCTCTCGAA ATACCGCGAG AAACGCGACT TCAAGAAAAC CGCCGAGCCC
AGCGGTGAAG TCGGGGTGAA GTCATCGAAC CGCCGTCGCT TCGTCATCCA GAAGCACGAC
GCTACACGGC TCCATTACGA TCTTCGGATC GAGATGGATG GTGTTTTCAA ATCCTGGGCG
GTCACCAAAG GTCCATCACT CGATCCACAT GACAAGAGAT TGGCGGTCGA GGTCGAAGAT
CACCCGCTCG ACTATGGCGA CTTCGAAGGC ACCATCCCCA AGGGTCAATA CGGTGGCGGA
ACCGTCATGC TCTGGGACCG GGGATATTGG GAACCCGAGG GAAACAAAAC GGCGGAACAA
GCCCTGGCCA AGGGCGATTT CAAATTCACG CTCGAAGGCG AGCGCCTGCA CGGTAGTTTT
GTGCTCGTCC GGATGCGCGG ACGCGAGGGC GAGAAGCGCA CCAATTGGCT CCTGATTAAG
CACCACGACG ACCATGCGGT TGAGGAGAAC GGCGCAGCCA TCCTGGAGGA GAACGACACC
TCCGTTGCGT CCGGTCGCAC GATGGAGGCG ATCGCGTCGG GAAAGGGCCG CAAGCCGAAA
CCTTTCATGA CGCAGGGCTC CGTCGTCGAG GCTGATGCTG TCTGGGATAG CACCGAGGGC
CTGGCCGCCG ACGAGCGAAA GGCCGGAACG AAGACGAAGG CAAAGCCGAC CAAGAAAGCC
GCCGCTGCTG CAAAGCAGCC GAACACCGGT ATGCCGGAAT TCGTGCCACC GCAGCTTTGC
GAAACGTTCT CCCGCCCGCC TTCTGCCGAG GGATGGATCC ACGAAGTCAA GTTCGATGGC
TACCGGATCC AGATGCGGGT GGTGGATGGC AATGTCACCC TGAAAACCCG CAAAGGCCTG
GACTGGACTG CGAAATGGCC CGCTATCGCC AAGGCTGCCT CGTCACTTCC CGATTGTATT
ATCGACGGAG AGATCTGCGC TCTCGACAAT CATGGTGCGC CGGACTTCGC CGCCCTTCAG
GCAGCACTTT CGGAAGAAAA GACCGATGAC CTCGTCTTCT TCGGTTTCGA TCTGCTATTC
GAAGGTGAGG AAGATCTCCG CGAAGCTCCG CTCACCGAGC GCAAAGAACG ATTGTCGGCA
ATGCTGTCCG ATGCGGGTGA CGATCCGCGT CTGAGGTTCG TCGAGCATTT CGAGACAGGC
GGAGACGCCG TGCTGAAGTC GGCGTGCCGA CTTTCGCTGG AAGGCATCGT GTCGAAAAAG
GGCGATGCAC CATACCAATC CGGCCGGAGT GACACCTGGA CGAAATCCAA GTGCCGGGCC
GGGCACGAGG TGGTCATCGG AGCCTATGCC ACGACCAACG GTGCCTTCCG ATCGCTGCTG
GTCGGTGTCT ATCGGGGCGA CCATTTCGTC TATGTCGGAC GGGTGGGAAC GGGCTATGGA
GCGAAGGTCG TCGACCAGAT CCTACCGAAG CTTCAAGCGT TGGAAGCGTC GAAATCGCCG
TTCACCGGAA TAGGCGCCCC AAAAAAAGCC GCCGAGATCG TATGGCTGAA GCCGGAACTG
GTAGCCGAGA TCGAATTCGC CGGCTGGACG GCTGATGGGC AAGTGCGCCA GGCTGCGTTC
AAGGGGCTGC GAGAGGATAA GCCCGCAAAA GAAGTCGAGG CCGAGAAGCC GGCAGAACCT
GCCGAAGTCG ATACGCCCGA CCCGGAAACT GCTCGCAAGC CGGCCCCGAC GCCGACGACA
TCTTCCCGTC TTCGCAAGGG TGCAAAGGTC GACGTCATGG GCGTCCTGGT CTCCAGCCCG
GACAAGGAGT TGTGGCCTGA CGCACTTGAT GGCGAACCCG TAACGAAAGT GGACCTCGCT
CACTATTATG AGGCAGTCGG GCCTTGGCTC ATCGATCATA TCAAGGGCCG GCCGTGCTCA
ATCATTCGCA CGCCTGACGG TATTGGCGGG GAGCAGTTCT TCCAAAGGCA TGCGATGCAG
GGGACATCAA ACCTGATCGA ACAGGTGAAA GTCTCAGGCG ACAAGCAGCC GTACCTCCAG
ATCGGCCGCG TCGAGGGTTT GGCCGCGATC GCACAGATCG GCGGCGCCGA GCTACATCCG
TGGAACTGCG AACCCTATCA GCCTGAAGTC CCCGGTCGTC TCGTCTTCGA TCTGGACCCA
GGCCCGGATG TCGACTTCGC GACAGTGGTA GAAGGTGCAC GAGAAATCAG GGATCGGCTT
GAAGAGCTGG GTCTGGTCAG CTTCTGCAAG ACGACGGGCG GCAAAGGGCT CCATGTTGTA
ACGCCGCTCG CTGTTCCGAA GGGCAAGAAG CTGAGCTGGG ACGAAGGCAA GGCTTTCGCG
CACGACGTGT GTCTGCAGAT GGCCCGCGAC AATCCCGAGC TTTACCTGAC CAAGATGTCC
AAGGCGCAGC GTGAAGGCCG TATCTTCCTG GATTATCTGA GAAACGACCG CACCTCGACG
GCGGTGGCTC CCCTGTCGCC CCGTGCCCGG CCGGGAGCAA CCGTCTCGAT GCCCTTGAAC
TGGGCTCAAG TAAAAAAAGG TCTCGATCCG AAGCGGTTCA CAATTCGCAC GGTGCCTGGA
CTTCTGAAGG ATAATACGGC GTGGCAGGAC TATTGCGATG GTCAAAGGCC GCTAGAGCAG
GCGATCAAGC GCTTGGAGAA ACTTATGAGG CGGGCTGCGT GA
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| Protein sequence | MPDNLSKYRE KRDFKKTAEP SGEVGVKSSN RRRFVIQKHD ATRLHYDLRI EMDGVFKSWA
VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW EPEGNKTAEQ
ALAKGDFKFT LEGERLHGSF VLVRMRGREG EKRTNWLLIK HHDDHAVEEN GAAILEENDT
SVASGRTMEA IASGKGRKPK PFMTQGSVVE ADAVWDSTEG LAADERKAGT KTKAKPTKKA
AAAAKQPNTG MPEFVPPQLC ETFSRPPSAE GWIHEVKFDG YRIQMRVVDG NVTLKTRKGL
DWTAKWPAIA KAASSLPDCI IDGEICALDN HGAPDFAALQ AALSEEKTDD LVFFGFDLLF
EGEEDLREAP LTERKERLSA MLSDAGDDPR LRFVEHFETG GDAVLKSACR LSLEGIVSKK
GDAPYQSGRS DTWTKSKCRA GHEVVIGAYA TTNGAFRSLL VGVYRGDHFV YVGRVGTGYG
AKVVDQILPK LQALEASKSP FTGIGAPKKA AEIVWLKPEL VAEIEFAGWT ADGQVRQAAF
KGLREDKPAK EVEAEKPAEP AEVDTPDPET ARKPAPTPTT SSRLRKGAKV DVMGVLVSSP
DKELWPDALD GEPVTKVDLA HYYEAVGPWL IDHIKGRPCS IIRTPDGIGG EQFFQRHAMQ
GTSNLIEQVK VSGDKQPYLQ IGRVEGLAAI AQIGGAELHP WNCEPYQPEV PGRLVFDLDP
GPDVDFATVV EGAREIRDRL EELGLVSFCK TTGGKGLHVV TPLAVPKGKK LSWDEGKAFA
HDVCLQMARD NPELYLTKMS KAQREGRIFL DYLRNDRTST AVAPLSPRAR PGATVSMPLN
WAQVKKGLDP KRFTIRTVPG LLKDNTAWQD YCDGQRPLEQ AIKRLEKLMR RAA
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