Gene Avi_8016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8016 
Symbol 
ID7365146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp14709 
End bp15530 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content56% 
IMG OID643641698 
ProductKu protein 
Protein accessionYP_002539995 
Protein GI222080132 
COG category[S] Function unknown 
COG ID[COG1273] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02772] Ku protein, prokaryotic 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0632763 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACCGC GTCGTCCCTA TTGGAGAGGT TACCTCAAGC TTTCGCTCGT CACTTGCCCT 
GTGGCCATGA CCCCGGCGAC CTCTGAATCG GAAAAGGTTC GCTTCCACAC GCTCAATAAG
GACACAGGCA ATCGTGTCGT CTCGCACTAT GTCGACAGCG TCACCGGAAA ACCCGTGAAG
GACGAGCAAG AGGCCAAGGG CTACGAGCGT GGCGAGAACG ACTACGTACT TCTGACAGAC
GAGGACCTGG AGTCCGTCGA GCTGGAGACG GTCCGCACGA TCGATATCGA GAAATTCATC
CCACGCGGAA GCATCGAATG GGTTTACTTG GAAACGCCCT TCTATCTTAC GGCTAACGAC
AAGATCGGCG ACGAGGCTTT TGCGGTCATC CGACAAGCCA TGGAGGCCGA GGACGTCGTC
GGCGTATCTC GCGTTGTCCT GGGTCGCCGC GAGCGGGCGG TTGTGCTTGA ACCACGCGGC
GAAGGCATCG TCGTCTGGAC GCTACGCTTT GGCGATGAAG TCCGGCCGGA AAGCGAGTAT
TTTACCGGCA TCGAGAAAAA GTCGGATGCA AAGGGCGTGT CGGCCGTCGA GGCAGTTATC
AAAAAGCGCA TGCAGGACTG GTCACCGGAG ATGGTGTCCG ATCCTATTCA AGAAAGCTTG
CTGAAGCTCA TCGCCGATAA GAAGAAGGCA AAGAAACCGA GCAAAGCGAA GGCTTCGAAA
TCCACAAAGG GCGACGACGA GGAAAAGAGC AACGTCGTCA ACATCATGGA TGCCTTGAAA
AAGTCGGTTG CCAAAGAACT CAAATCCCGC AAAGCCGGAT GA
 
Protein sequence
MAPRRPYWRG YLKLSLVTCP VAMTPATSES EKVRFHTLNK DTGNRVVSHY VDSVTGKPVK 
DEQEAKGYER GENDYVLLTD EDLESVELET VRTIDIEKFI PRGSIEWVYL ETPFYLTAND
KIGDEAFAVI RQAMEAEDVV GVSRVVLGRR ERAVVLEPRG EGIVVWTLRF GDEVRPESEY
FTGIEKKSDA KGVSAVEAVI KKRMQDWSPE MVSDPIQESL LKLIADKKKA KKPSKAKASK
STKGDDEEKS NVVNIMDALK KSVAKELKSR KAG