Gene Avi_8006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_8006 
Symbol 
ID7365138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011982 
Strand
Start bp7357 
End bp8493 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content62% 
IMG OID643641690 
Productintegrase protein 
Protein accessionYP_002539987 
Protein GI222080124 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCAAA TCATCAAGCA AAACAGCGAA AATCACGTCG AGGAGACCTC AGCGCCGTCT 
CACAGCACGG TGGCCGAGCG TGATGTCTCC GCGTCGGAGG TGTCGGGCGA TAGCCCCCTC
CCCTCTCTCG TCGGCGAGGA TCAGACGCCC GCCCATCTTG CAAGCCTTGC TGATCGCGCC
CGCGGCTATG TCGCAGCAGC AAGTTCCGCC AATACCCGCA AGGCTTACGC GTCAGACTGG
AAGCATTTTG CCGCCTGGTG CCGGCGGTCC AATCTGGCTC CGCTCCCACC ACACCCGCAA
ACCGTCGGTC TTTACATCAC GGCTTGTGCT TCAGGACATG TCGAACGCAG TGGCAAACCG
AATTCGGTCT CAACGATCGA GCGGCGCCTC TCTTCACTCA GTTGGAATTA CGCGCAGCGC
GGCGGACAAA AACTTGATCG CAGGGATCGG CATATTGCAA CGGTCATGGC CGGCATCCGC
AACAGCCATG CCAGGCCTCC GGTGCAGAAG GAGGCGGTCA TGGCAGAGGA TATCATCGCC
ATGGTCGAGA CGCTTGATCG CGGCTCTCTG CGCGGGCTGC GGGATCGGGC AATGTTGCTC
ATCGGCTTTG CCGGCGGTCT TCGGCGCTCC GAAATCGTTG ACCTTGATCT GAAGCCGGAC
CAGACCGAAG ACGGCCGAGG CTGGATTGAG ATCCTCGACA AGGGCATGCT CGTCACCCTG
CGCGGCAAAA CTGGATGGCG AGAAGTTGAG ATCGGGCGCG GTTCGTCGGA CGCCACCTGC
CCAGTTACCG CGGTCGAGAT GTGGATCAAG TTTGCCAAGC TGGCCCATGG CCCCCTCTTT
CGCCGCGTCA CGGGGCAAGG GAAGGCTGTT GGGCCAGAAC GGCTGAATGA CAAGGAAGTG
GCTCGGCTGG TTAAGCGGGC CGCGATGGCG GCCGGCGTTC GCGGCGATCT CAGCGAAATC
GAACGTGCGT TTAAGTTCTC CGGTCACTCC CTTCGCGCCG GGTTGGCCTC CTCTGCCGAG
GTCGACGAAC GGTATGTGCA GAAACAGCTG GGACACTCGT CCGCGGAGAT GACCCGCAGA
TATCAGCGGC GGCGTGACCG CTTCCGCGTC AATTTAACGA AGGCTTCAGG GCTTTAG
 
Protein sequence
MAQIIKQNSE NHVEETSAPS HSTVAERDVS ASEVSGDSPL PSLVGEDQTP AHLASLADRA 
RGYVAAASSA NTRKAYASDW KHFAAWCRRS NLAPLPPHPQ TVGLYITACA SGHVERSGKP
NSVSTIERRL SSLSWNYAQR GGQKLDRRDR HIATVMAGIR NSHARPPVQK EAVMAEDIIA
MVETLDRGSL RGLRDRAMLL IGFAGGLRRS EIVDLDLKPD QTEDGRGWIE ILDKGMLVTL
RGKTGWREVE IGRGSSDATC PVTAVEMWIK FAKLAHGPLF RRVTGQGKAV GPERLNDKEV
ARLVKRAAMA AGVRGDLSEI ERAFKFSGHS LRAGLASSAE VDERYVQKQL GHSSAEMTRR
YQRRRDRFRV NLTKASGL