Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_8006 |
Symbol | |
ID | 7365138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011982 |
Strand | - |
Start bp | 7357 |
End bp | 8493 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643641690 |
Product | integrase protein |
Protein accession | YP_002539987 |
Protein GI | 222080124 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCCAAA TCATCAAGCA AAACAGCGAA AATCACGTCG AGGAGACCTC AGCGCCGTCT CACAGCACGG TGGCCGAGCG TGATGTCTCC GCGTCGGAGG TGTCGGGCGA TAGCCCCCTC CCCTCTCTCG TCGGCGAGGA TCAGACGCCC GCCCATCTTG CAAGCCTTGC TGATCGCGCC CGCGGCTATG TCGCAGCAGC AAGTTCCGCC AATACCCGCA AGGCTTACGC GTCAGACTGG AAGCATTTTG CCGCCTGGTG CCGGCGGTCC AATCTGGCTC CGCTCCCACC ACACCCGCAA ACCGTCGGTC TTTACATCAC GGCTTGTGCT TCAGGACATG TCGAACGCAG TGGCAAACCG AATTCGGTCT CAACGATCGA GCGGCGCCTC TCTTCACTCA GTTGGAATTA CGCGCAGCGC GGCGGACAAA AACTTGATCG CAGGGATCGG CATATTGCAA CGGTCATGGC CGGCATCCGC AACAGCCATG CCAGGCCTCC GGTGCAGAAG GAGGCGGTCA TGGCAGAGGA TATCATCGCC ATGGTCGAGA CGCTTGATCG CGGCTCTCTG CGCGGGCTGC GGGATCGGGC AATGTTGCTC ATCGGCTTTG CCGGCGGTCT TCGGCGCTCC GAAATCGTTG ACCTTGATCT GAAGCCGGAC CAGACCGAAG ACGGCCGAGG CTGGATTGAG ATCCTCGACA AGGGCATGCT CGTCACCCTG CGCGGCAAAA CTGGATGGCG AGAAGTTGAG ATCGGGCGCG GTTCGTCGGA CGCCACCTGC CCAGTTACCG CGGTCGAGAT GTGGATCAAG TTTGCCAAGC TGGCCCATGG CCCCCTCTTT CGCCGCGTCA CGGGGCAAGG GAAGGCTGTT GGGCCAGAAC GGCTGAATGA CAAGGAAGTG GCTCGGCTGG TTAAGCGGGC CGCGATGGCG GCCGGCGTTC GCGGCGATCT CAGCGAAATC GAACGTGCGT TTAAGTTCTC CGGTCACTCC CTTCGCGCCG GGTTGGCCTC CTCTGCCGAG GTCGACGAAC GGTATGTGCA GAAACAGCTG GGACACTCGT CCGCGGAGAT GACCCGCAGA TATCAGCGGC GGCGTGACCG CTTCCGCGTC AATTTAACGA AGGCTTCAGG GCTTTAG
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Protein sequence | MAQIIKQNSE NHVEETSAPS HSTVAERDVS ASEVSGDSPL PSLVGEDQTP AHLASLADRA RGYVAAASSA NTRKAYASDW KHFAAWCRRS NLAPLPPHPQ TVGLYITACA SGHVERSGKP NSVSTIERRL SSLSWNYAQR GGQKLDRRDR HIATVMAGIR NSHARPPVQK EAVMAEDIIA MVETLDRGSL RGLRDRAMLL IGFAGGLRRS EIVDLDLKPD QTEDGRGWIE ILDKGMLVTL RGKTGWREVE IGRGSSDATC PVTAVEMWIK FAKLAHGPLF RRVTGQGKAV GPERLNDKEV ARLVKRAAMA AGVRGDLSEI ERAFKFSGHS LRAGLASSAE VDERYVQKQL GHSSAEMTRR YQRRRDRFRV NLTKASGL
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