| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8004 |
|---|
| Symbol | |
|---|
| ID | 7365136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 5296 |
|---|
| End bp | 6183 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643641688 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539985 |
|---|
| Protein GI | 222080122 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTG ATGACGAGTA TGGATTTCGC GAAGTGGAGT TTTCCCTCCA TGAAGCGCAG
GCCGAGAGGT TATTCATCAG GGGAAAAAAT GCCGCAAACG ACCAGTACTT CGATAATCAG
GCGCGGGAAA ACCACATCTA CAGCGTCAAC AACGCATTGA ACCAGCTCTT GGGTGATGCG
GCAGTATTGG TCGAACTCGG TGTCCTCACA CAGACGGCCG ACTACTTCAT GCGTTTCGGC
GTACTTCGCC GACTAAGAAT GATGATATCT TCTTTTCGCA ACCTCCAAAG TATCATCATG
CCGGACCGTA CAGTCCCCCT GACAATGGAT CAGTCTGACG AGGTTTGTCG CGACCTAAAC
GCAATATACG TCAACATCCT TGGCCTCCTC GATAACTATG CGTGGACGAT CGTCCATCAG
GTGGGCAGCG TCGCAACTCA AGCCGCAAAG CCGCTTTCCG TTAGCCTTTT CAAGCCCATG
TTTGCCGCCG ACCCGGCTCT GTCGAACGTG GCGGCCACTC TAAGATCATT CGCGACCTGG
GAAACCGACG TGAAAAAGCG AAGGAACCCG GCGGCCCACC GAATGCCCCT TTATGTCCCG
CCTGCCGGAT ATGACCGGGA GGCGACAGAG ACTCTTCGGG ATCTCGACCA ACAGATTTCG
ACAGCCCTTC GCGAGCAGGA TTTCGACAAG ATGCACAATT TGCAGCGCAA GCGCGAGCGG
GTCGGCATTT TCGTTCCCAT CTTCGTCCAT GATCCTGGAG AGGAGATAAA CGACATCTAC
CCTACTCTAC CGCAGGACCT AGGGCAGATG GTCAAGATCG GCCGTATCTC CCAGACCTTT
CTCCGAAAGC AGCATGCGCC TAACGACGCC TCTCACGAAG GAAACTGA
|
|---|
| Protein sequence | MGFDDEYGFR EVEFSLHEAQ AERLFIRGKN AANDQYFDNQ ARENHIYSVN NALNQLLGDA
AVLVELGVLT QTADYFMRFG VLRRLRMMIS SFRNLQSIIM PDRTVPLTMD QSDEVCRDLN
AIYVNILGLL DNYAWTIVHQ VGSVATQAAK PLSVSLFKPM FAADPALSNV AATLRSFATW
ETDVKKRRNP AAHRMPLYVP PAGYDREATE TLRDLDQQIS TALREQDFDK MHNLQRKRER
VGIFVPIFVH DPGEEINDIY PTLPQDLGQM VKIGRISQTF LRKQHAPNDA SHEGN
|
|---|
| |