| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8002 |
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| Symbol | repC |
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| ID | 7365134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 2487 |
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| End bp | 3731 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643641686 |
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| Product | replication initiation protein RepC |
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| Protein accession | YP_002539983 |
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| Protein GI | 222080120 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACGG GACATGTAAC GACGCCCTTT GGGCGGCGGC CGGCGACGCT TGCCTTGGTG
AAAGGGCAAC TGGCTGTCGC GGCATCAACA CCGGGCACGC GAGTCGAAAA GTGGAAAGTA
TTTCGCGATG TGTGCGAGAC GAGAGAGCGC TTCGGTTTGC AAGACAGAGC GCTTGCCGTT
CTCGATGCCC TTTTGACATT CTACCCCGAT GCACAGCTCG ACGCTGAAAA CGGGCTTGTT
GTATTTCCAT CCAATGCGCA GCTATCCGTC CGCGCTCATG GGATCACGGA AAGTACACTG
CGCCGCCAGC TCGGCGCACT TGTGGATGCA GGACTTATCC AGCGTCGTGA TAGTCCGAAC
GGGAAGCGAT ACGCACATCG CAGTCGAGAC GGTGAAATCG AGCAGGCTTA CGGCTTCGAT
CTGAGCCCGC TGCTTACGCG TGCCGCCGAG CTTGCCTTGC TGGCTCAGGA TGTCGCCGCG
GAGCGCATGC GTTTTCGCCG GGCGAAGGAA GCACTCACGA TCTGCCGCCG AGATGTCCGT
AAGCTGATTA CAGCCGCGAT GGAGGAAGGC GCTCCAGGCA ATTGGGCGCA TGTTGAAACA
ATATACGTTG GAATTCTCAG GCGGCATCCT CGCTACCCGG ACAGAAACCA GGTCGAAACA
ACACTCGATG AGATGGAGCT CTTGCGTGCG GAGATCCTCA ACCTCCTGGA AATGCAGTCA
GAAACTAAAG ATATGCACGG CAATGCCAGT CTGGATGACC GTCACATACA GAATTCAAAT
ACCGAATCTA TAAATGAACT TGAACCGCGC TCTGACAACG AGCAGGGCGA AAGCGTGCCG
GACGAGCCGC ACGCAAAGAG TGTGACGTCC GGAAAGACAA AGGCAAAGCT CGAACAAATC
AAAGCGTTCC CGCTGGGAAT GGTCCTTCGA GCTTGCCCGC AGATTGCTGA TTATGGGCCG
GGCGGCGGCA TCGCCCATTG GCGCGAGCTC ATGACCGCGG CTGTAGTGAT CCGCTCGATG
TTGGGTGTCA GCCCGTCAGC CTATGAGGAG GCCTGCAATG CGATGGGGCC AGAAAATGCC
GCGGTGGCTA TGGCATGCAT TCTCGAGCGA TCAAACTTCA TAAACTCGGC CGGCGGCTAT
CTGCGCGACC TGACGAAGCG CTCGGAGCGT GGAGAATTTT CGTTGGGTCC TATGCTGATT
GCCCTGCTTA AGGTCAACGG AGAGACCGCA CGTCGCGTCG GCTGA
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| Protein sequence | MQTGHVTTPF GRRPATLALV KGQLAVAAST PGTRVEKWKV FRDVCETRER FGLQDRALAV
LDALLTFYPD AQLDAENGLV VFPSNAQLSV RAHGITESTL RRQLGALVDA GLIQRRDSPN
GKRYAHRSRD GEIEQAYGFD LSPLLTRAAE LALLAQDVAA ERMRFRRAKE ALTICRRDVR
KLITAAMEEG APGNWAHVET IYVGILRRHP RYPDRNQVET TLDEMELLRA EILNLLEMQS
ETKDMHGNAS LDDRHIQNSN TESINELEPR SDNEQGESVP DEPHAKSVTS GKTKAKLEQI
KAFPLGMVLR ACPQIADYGP GGGIAHWREL MTAAVVIRSM LGVSPSAYEE ACNAMGPENA
AVAMACILER SNFINSAGGY LRDLTKRSER GEFSLGPMLI ALLKVNGETA RRVG
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