| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8001 |
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| Symbol | repB |
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| ID | 7365133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011982 |
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| Strand | + |
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| Start bp | 1336 |
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| End bp | 2331 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641685 |
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| Product | replication protein B |
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| Protein accession | YP_002539982 |
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| Protein GI | 222080119 |
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| COG category | [K] Transcription |
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| COG ID | [COG1475] Predicted transcriptional regulators |
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| TIGRFAM ID | [TIGR00180] ParB-like partition proteins
[TIGR03454] plasmid partitioning protein RepB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCACGTG AAAATCCTTT TTCTAAATTG GACATGGCTT CCATCGCGTC GAACCAGACA
CCGACAAAGC CTGGCTACGG TATGACGGGG GCAGCCAAGA CCGTCGTCCG GTCCATCGAG
GATCTGGCTG AGAACACAAA GAAGCTGATG GAAGGCGAGG TGATCGTGGA TCTGGATCCG
CGGTTGATTG ACGTTTCCTT TCTCGCCGAT CGCCTTTCCG ACGATGGCGA AGAGTACCAG
GAGCTGAAGC AGGCGATTGC GTCGTCCAGC CAGACGACAC CGATTCTGGT CCGACCCAGT
TCGTCGGATA GTCAACGCTT CATGGTCGTC TTCGGTCACC GCCGTCTCAA AGTCGCCAAA
GAGCTTGGAA TTCCGGTCAA GGCAGTTGTC AAGAAGCTGG ATGACATCAC GTCCGCAATC
GCCCAGGGGC AGGAAAATTC CGCACGCTCC AACCTGTCGT TCATAGAGCG TGCGTACTTC
GCGCAGAACC TCCTTTCGTC TGGAATGACG AAGGACGTGG TTCGGTCGTC GCTCGCGATC
GATGAGGCGA TGCTTTCGAA AATGCTCAGT GTCGTGGAGG CCGTCCCAGC TTCGATCCTT
AAGGTGCTCG GGGCCTCCAA GAAGATTGGG CGCGACCGGT GGCTTAGCCT CCGTCAATTG
CTTCTTGCTC CTGCCCTCCT GAAGGTTGCG ACGGAGCATG TCGAAACGGC AGGCTTCGTT
GAGCTGACTG AAGACAAGCG GTTCGATGAG CTCCATGACT ACCTGAAGCG CTACAAGGCC
AAATCGGCTG CAAAGAAGCC CAAGGCCGGT GCGTCCGGGA GGGATTGGAC TTCGAGCGAT
ACGTCACTGA ATTTCGTGAT GAATGCCAAA TCGAAAAAGG TTGCGATCGA GCTTTCGAAT
GTCGAAGCGA AGCCCTTCAG CGAGTGGCTA TCAGCCCACA TGGATCGTTT GTACGACGAG
TACAGAGGAT CGAAGCAGGA AAACAACGGA GACTAA
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| Protein sequence | MARENPFSKL DMASIASNQT PTKPGYGMTG AAKTVVRSIE DLAENTKKLM EGEVIVDLDP
RLIDVSFLAD RLSDDGEEYQ ELKQAIASSS QTTPILVRPS SSDSQRFMVV FGHRRLKVAK
ELGIPVKAVV KKLDDITSAI AQGQENSARS NLSFIERAYF AQNLLSSGMT KDVVRSSLAI
DEAMLSKMLS VVEAVPASIL KVLGASKKIG RDRWLSLRQL LLAPALLKVA TEHVETAGFV
ELTEDKRFDE LHDYLKRYKA KSAAKKPKAG ASGRDWTSSD TSLNFVMNAK SKKVAIELSN
VEAKPFSEWL SAHMDRLYDE YRGSKQENNG D
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