| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7680 |
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| Symbol | |
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| ID | 7380315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 609978 |
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| End bp | 611372 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641667 |
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| Product | porin B |
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| Protein accession | YP_002539964 |
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| Protein GI | 222102925 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00131365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACCC ATCTCAAGCA ACTTGTTATC CTCAGTGCTG CATACGGAGT GCTGGCAAGC
GGACTTCCTG CCGTAGCAGC CGATGCCAAC ACCCCTGCCG ATCCTTCCAT CGCGAAGGCT
CCAGACCCGC AGGCCCCTCC TCCCGGCCCC TTGACCGGCC TTGGACACAC GCTCCATGAC
GCCGGTTTTG ATGTCCGCAT CAATTTCGTC AATCTCTATG CAAATGCGTC AGATTTCGGG
TTTGATCCGG GCCATTCTGG TAACTTCGGC TTTCTGATGT TCGACACGAC ATACCATATA
TCAGACATGT TCAAGATCAA CTGGCAGGAA ACGGTCAACA TTCCCAGGCA CAATGCCAAT
CAGTATCTGT TTCAAGTCTC GAATGCCTTT TACGCTACGG ACCCTTCTCT CGATAGTTCA
ACCGATCTTA CACGCCTTAC CCTCCAGGGG GATTTTTTTG ACGGAAAGCT GGAGGTCGAG
GGCGGTCGGC TCAACATGTG GCCGGAGTTT TTCAGGTCAG AGTTCTGCGG TGGCAAGGGG
TGCATCTCGC AAACCCGTGC GTTGGTGTTA AGCGCTCCCG GCAACACCGT TGCGCAATGG
GGTGGCCGCG TTGGCTACAA TCTCACGCCG GATCTCTCCC TCGGTGGCGT CATCACCGAG
AACAACACAG AAAACTGGCA GACAGGATCG GGCTGGAACT GGGGGAGAGG CGATTCTGAC
GGTTATACCG CCGTGGTCCA CCTCGCCCAG CGGCAAAATT TTCTGGAGAC AGCGAAGCCG
CTTAACTATG AAATTGGTGG TTATCGAAGC TCTGCATCCT ACACGGACGC GCTATACGGC
ACAGGCTGGG GCAATCCAAC CTTTGGCGCG AACCAGACAG TGATCGAACA TGACGGGGGA
TCAAACGGGG TTTTTGCTCA GGTTCGAAAA GTTCTCTGGA GTGATCCCGA TGGAAGCCCC
TTCCCCGAAA ACATCGCGGT TTCAGGCGGC ATCTTCCACA CGTTCGGAGA CGGTCAATCC
TATCCGTGGG AAGCTTATGG CAGCATTGAA TATGGCGGCT TCTGGAAAGC TAACCCCCTC
ACATCTATAG GCGCGACGGT TCACTATATT GGCCTCAGTG AAAAACGTGC CCAATACGAA
ACCAACGCGC GCCGGTTTTT GACAGGCATC TACGACCGGC AGCCGCGAGA CACGTTCCAG
TTCGATCTGC ACGGACGGAC AGGAATAGGC CCCGCTGGAT TTCTTGAGTT TGGGGCATCT
TACGTCAAGG ATCCCAACAC AACCTACCTT GCTGACTATT CCACCTCAAG AATGAAGAAC
GGCTGGACCA TCTATGCAGC CATTGTCTTC GACCTTGGAA CCACTCTGGG GCTATCACCA
CCGCCCCAAC CCTAA
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| Protein sequence | MKTHLKQLVI LSAAYGVLAS GLPAVAADAN TPADPSIAKA PDPQAPPPGP LTGLGHTLHD
AGFDVRINFV NLYANASDFG FDPGHSGNFG FLMFDTTYHI SDMFKINWQE TVNIPRHNAN
QYLFQVSNAF YATDPSLDSS TDLTRLTLQG DFFDGKLEVE GGRLNMWPEF FRSEFCGGKG
CISQTRALVL SAPGNTVAQW GGRVGYNLTP DLSLGGVITE NNTENWQTGS GWNWGRGDSD
GYTAVVHLAQ RQNFLETAKP LNYEIGGYRS SASYTDALYG TGWGNPTFGA NQTVIEHDGG
SNGVFAQVRK VLWSDPDGSP FPENIAVSGG IFHTFGDGQS YPWEAYGSIE YGGFWKANPL
TSIGATVHYI GLSEKRAQYE TNARRFLTGI YDRQPRDTFQ FDLHGRTGIG PAGFLEFGAS
YVKDPNTTYL ADYSTSRMKN GWTIYAAIVF DLGTTLGLSP PPQP
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