| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7657 |
|---|
| Symbol | |
|---|
| ID | 7380297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 592357 |
|---|
| End bp | 593067 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641649 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539946 |
|---|
| Protein GI | 222102907 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2049] Allophanate hydrolase subunit 1 |
|---|
| TIGRFAM ID | [TIGR00370] conserved hypothetical protein TIGR00370 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACAA TGGATATGAA AACCCTGACA CATCCCGCAG TGATTGCTTC CTCCACAGCG
GATATGCCGA AAATCTCTGC CATTGGCACC AAAGCCTTTG TGGTGGATGC GCCCGGCCCG
TTTGATTTGG CCTCGCAGCG GCGTATCTGG GCCTTATCCG CCATAGTTCA GGATTGGCCG
GATGTGCAGG AAATTGTGCC GGGCATGACC AATCTGCTGT TGGTGCTGCA TCACACGCCT
GAAGACCACG CGGCCATCGC AAGCCGCCTG CTGGAAGCAT GGAATGCGGC GCAAGGCATG
GATTTGACCG GGAAAACCGT TGAAATCCCG GTGACCTATG GTGGAGACCA TGCCACTGAT
CTTCCTGCGC TTTGCGATCT TTCCGGCCTA TCAGATCGCG ATATTGTCAA AATTCATGCG
GCTGGTACCT ACACCGTGTT TGCACTGGGT TCTGCACCGG GCTTTGGCTA CCTGCATGGA
CTTGACCCGC GCATTCACAT GCCGCGAAAA ACCGTGCCAT CGCTGAAAAT GGCGCGTGGC
TGCCTGACCA TTGGCGGCAT GCAGACCGGG GTTGCAGTCT TGACCGGGCC GAATGGCTGG
AACTCCATCG GCTTTGCCGA CGTGCCGATG TTTGATCCCA TGGCGGCCTC GCCTGCCCTG
CTGGCTCCCG GCGATACGGT GCGCTTTATT GCCGAGAGGA TCGAGCTATG A
|
|---|
| Protein sequence | MATMDMKTLT HPAVIASSTA DMPKISAIGT KAFVVDAPGP FDLASQRRIW ALSAIVQDWP
DVQEIVPGMT NLLLVLHHTP EDHAAIASRL LEAWNAAQGM DLTGKTVEIP VTYGGDHATD
LPALCDLSGL SDRDIVKIHA AGTYTVFALG SAPGFGYLHG LDPRIHMPRK TVPSLKMARG
CLTIGGMQTG VAVLTGPNGW NSIGFADVPM FDPMAASPAL LAPGDTVRFI AERIEL
|
|---|
| |