Gene Avi_7648 details

Gene Information

• Locus tag: Avi_7648
• Symbol: acoR
• ID: 7380289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 582859
• End bp: 584745
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643641641
• Product: transcriptional regulator
• Protein accession: YP_002539938
• Protein GI: 222102899
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0655573
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTTTTG CCGATCACGT CAAGGAAATC GAGCGCGTCG GGCAGGGAAG CAATACCGGC 
CGCGACGCCA TTGTCGTGGA ATCCTGGCGG CGTTGCCTGG AGACCTACCA GCTCGACCCG 
GCGCAAGCGC GTGAGGCGGT TATCGTCTCG CAAACACGCC TGCGCGAACA TCGTCAGCAG 
GCGGAGGACC TCGTACACAT CGCACGCTCT GGGCTGGAGC GGCTCTACCG GCAGGTTGCC 
GAGCAGAATT ATGTTCTTCT CCTCTCCGAC CGGCAGGGCG TAACCGTCGA ATTTCTCGGT 
GATCCCTCCT TCAACAACAA CTTGCGAAAG GCCGGGCTCT ATCTCGGCTC GGAATGGTCC 
GAGCCCCGCG CTGGCACGTG CGCTGTTGGC GCCTGCCTGG CCACCGGCGA GGCTCTGACG 
ATCCATCAGA CCGACCATTT TGACATCACC CATACACCAC TCTCCTGCAC CGCTGCACCG 
ATCTATGACA CGCAAGGCGC GTTGGCAGCG GTCCTCGATA TTTCGCTGCT GAGCTCACCC 
ATCTTAAAGA CGAGCCAGAA TATGGCACGT CATCTTGTCT CCTCGACCGT GCGGCGCATC 
GAGCTCGCCA ATCTCATGGC GAACAGTCGA CACGACCTGG TGCTGCGCTT TGCTGGCGCG 
CCGGAATTTC TCGATGTTGA TCCGGAAGCG GCGATTTCCG TCGATGGCGC CGGACGCATC 
ACCGGCATGA CGCATGGCGG CGCGCGGCTT CTCGCTGCCT CGCGTGGAAT TGACTGGCGA 
CAGCCCGAGC TTGTGCTTGG CCAGCCGGTC GCGGATTTTT TCGAGGCAGG CTTGGACGAG 
CTCGCTTCGC TGACCCGCGC CAGCCTGCCG CAAGACCGGC GGATTGCCGT GCGCGATGGG 
TCGGTCCTCT TTGCCCATGC GATCGAGCCG CAACAGCGCG TGGCCGGGAC GCCGCTCGTC 
CGAGCTCTTC GGTCGCCGCC AGCCATGAAC CTGCTCGGCG GCAGTGTCGA AATCATGGAC 
AGCCTTCGCC GCAAGATCGC CAAGCTCGCA CCGAGCGCAC TGCCGATCCT GCTTCAGGGC 
GAGACCGGAA CCGGCAAGGA ATATCTGGCA CGCATCATCC ACGAGGTGAG CGGGTTGTCA 
GGCCGCTTCG TTGCGGTCAA TTGCGCAGCA ATCCCTGAAC AGCTGATCGA AAGCGAATTG 
TTCGGCTATG CGCCAGGCGC CTTCACCGGC GCCCTTGTCA AGGGACGAAA GGGGTTGGTC 
GAGGAAGCGG TGGGCGGAAC CCTGTTCCTC GACGAAATCG GCGACATGCC ATACGCCGCG 
CAAAGCAGGT TGCTCAGGGT TCTGGCCGAG GGTGAGGTGT TGCCGGTCGG CGGTTCGGTG 
GCGCGCAAGG TGGAGTTTCG CGTCGTGTCT GCGTCGCATC GGTCTTTGGC CGACATGGTC 
GCAACCGGCG CATTCCGGCA AGACCTCTAT TACCGGCTGA ATGCCGCCGT ACTATCCCTT 
CCACGGCTTT GTGAGCGCGG CGACTTGCCA TGGCTCCTCG ACAAGTTGCT CGAAAAACAT 
GCTCCGGTGA ACCGATCGCT CAGGCTTTCA AACACTGCCC GCCTTTTGAT CCTCAATCAT 
CGCTGGCCAG GCAATATCCG CGAGCTGGAC AATGCGATCG CCTTCGCCGC AGCCCTGTGC 
GACGATGGGC TGATTGAGGT AACGGACCTT CCAGAACAGC TGGCTGCCAA CGTGCAGCTG 
CCTGGCGACG ACAGCCCTGA AGCCGAACTT CGCGCGGTGC TCGCCGCTTG CCATGGCAAT 
GTTTCCGAGG CGGCGCGCCG CCTCGGTATT GATCGCACCA CAATGCATCG CCGTATGCGC 
AGGTTCGGCA TAGACAGGCC GCATTGA 

 

Protein sequence

MGFADHVKEI ERVGQGSNTG RDAIVVESWR RCLETYQLDP AQAREAVIVS QTRLREHRQQ 
AEDLVHIARS GLERLYRQVA EQNYVLLLSD RQGVTVEFLG DPSFNNNLRK AGLYLGSEWS 
EPRAGTCAVG ACLATGEALT IHQTDHFDIT HTPLSCTAAP IYDTQGALAA VLDISLLSSP 
ILKTSQNMAR HLVSSTVRRI ELANLMANSR HDLVLRFAGA PEFLDVDPEA AISVDGAGRI 
TGMTHGGARL LAASRGIDWR QPELVLGQPV ADFFEAGLDE LASLTRASLP QDRRIAVRDG 
SVLFAHAIEP QQRVAGTPLV RALRSPPAMN LLGGSVEIMD SLRRKIAKLA PSALPILLQG 
ETGTGKEYLA RIIHEVSGLS GRFVAVNCAA IPEQLIESEL FGYAPGAFTG ALVKGRKGLV 
EEAVGGTLFL DEIGDMPYAA QSRLLRVLAE GEVLPVGGSV ARKVEFRVVS ASHRSLADMV 
ATGAFRQDLY YRLNAAVLSL PRLCERGDLP WLLDKLLEKH APVNRSLRLS NTARLLILNH 
RWPGNIRELD NAIAFAAALC DDGLIEVTDL PEQLAANVQL PGDDSPEAEL RAVLAACHGN 
VSEAARRLGI DRTTMHRRMR RFGIDRPH