| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7616 |
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| Symbol | nikC |
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| ID | 7380267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 555935 |
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| End bp | 556810 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641619 |
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| Product | nickel transporter permease NikC |
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| Protein accession | YP_002539916 |
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| Protein GI | 222102877 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA CGTCAGCATT GCACTCACCC ACGCGCCCGG CTGGCTTTTG GCGCTCCTCA
TCGCTGGGTG TCAAAGCCTG TGGTGTCATC GTTCTGCTGC TGGTAGTGGC CACGATTGCG
GGGCCATGGA TTTCGCCGCA TGATCCGAAT TTTGTCGAAT TATCGCAGCG GCTTCAACCG
CCAGACCTGA GCCACTGGCT TGGAACTGAT CACTTGGGCC GCGATATTTT CTCGCGACTG
GTTGCCGGTG CCCGCGTGTC GCTGGGCTCT GTTGCCATTG CGCTGGGCCT GATCATGGTC
ACCGGCATTG TCCTTGGCGG AACCGCAGGC GTTATCGGCG GGCGCACCGA TCAGCTGATC
ATGCGCATTG CCGATGTGTT TTTGACCTTT CCAACGCTGG TGCTGGCGCT GTTTATGGTT
GGAATGCTGG GCACGGGCCT TACCAATGTC ATCCTCGCCA TCGCTCTCTC CCACTGGGCC
TGGTATGCCC GGATTGTGCG CGGAATTGTG TTGTCCCTGC GCCATCGGGA GTTTCTGCTG
GCGGCGCGCA TGAGCGGCGC AGGACCGATC AGAACCTTTA TAGATCACCT GCTTCCCGCA
ACCCTGTCTC AGCTGGTGGT GCTGGCCACG TTGGATATTG GCCATATCAT GCTGCATGTC
TCTGGCCTGT CTTTTCTGGG ATTGGGCGTC ACCGCGCCCA CGGCGGAATG GGGCGTGATG
ATCAACGATG CCCGCCAATA TGTCTGGACA GCGCCGTCGC TGATCCTGTG GCCGGGATTA
ACCCTGTTTA TCAGCGTCAT GGCCTTCAAC ATTCTGGGCG ATGCCCTGCG CTACAGGCTC
GATCCCCATT TGCGTGTGGA GCATGGTCAC CAATGA
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| Protein sequence | MSQTSALHSP TRPAGFWRSS SLGVKACGVI VLLLVVATIA GPWISPHDPN FVELSQRLQP
PDLSHWLGTD HLGRDIFSRL VAGARVSLGS VAIALGLIMV TGIVLGGTAG VIGGRTDQLI
MRIADVFLTF PTLVLALFMV GMLGTGLTNV ILAIALSHWA WYARIVRGIV LSLRHREFLL
AARMSGAGPI RTFIDHLLPA TLSQLVVLAT LDIGHIMLHV SGLSFLGLGV TAPTAEWGVM
INDARQYVWT APSLILWPGL TLFISVMAFN ILGDALRYRL DPHLRVEHGH Q
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