Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7614 |
Symbol | nikB |
ID | 7380266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 554994 |
End bp | 555938 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643641618 |
Product | nickel transporter permease NikB |
Protein accession | YP_002539915 |
Protein GI | 222102876 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02789] nickel ABC transporter, permease subunit NikB |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCGCGT TTATCCTGCG GCGCATTTTG CTGCTGATCC CAATGCTGCT TGGCGCATCA CTGGTGATAT TTCTCATGCT GCGGCTTGGT CCGAGCGATC CGGCCATGGA TTACTTACGC CTGTCCAAAG TGCCGCCAAC GCCTTTGGCG CTGGCAGATG CCCGGCAGAT GCTTGGCCTC GACCGCCCGA TTGCCACTCA ATATATCGAT TGGTTGGGCC ATGCCTTCCG GTTGGATTTT GGCGTATCCT ATGCCACGCA AAGGCCGGTT TTGCCAGACT TGCTCTACTA TCTTCCGGCA ACGCTGCAAC TGGCCGGGCT GGCGCTGATC CTGACCTTTG CCATTTCCAT CCCGATGGGT GTCTGGGCAT CGCGCCACCG GAACAAGCTG CCCGATCATA TCGTGCGGCT GGTGTCATTC CTGGGTGTGT CCATGCCCAA TTTCTGGCTG GGCTTTCTGC TGGTGCTGGT GTTTTCCGTG CAGCTCGGCT GGCTTCCCGC CATGGGCCGC GGCGGCTTTG CCCATATGAT CATGCCGGCC ATTGCCATCG CCTTCATGTC CCTGTCCATC AATGCGCGGC TGTTGCGCGC CAGCATGCTG GAGGCTGCGG GGCAGCGCCA TGTGCTCTAT GCCCGGCTGC GTGGCCTTTC CAGACAGCGA GTTGAGCGGG GCCATATCCT CAGAAACGCG CTTTTGCCAA TCATCACCGC CACGGGCATG CATGTCGGCG AATTGCTTGG CGGCACGCTG GTGATTGAAA GTATTTTCGG CTGGCCCGGT GTTGGCCGCT ATGCCGTTTC TGCCATCCTG AACCGGGACT ATCCCGTCAT TCAGTGTTTT ACCTTGTTGA TGGTGGGCAT TTTCGTGACC TGTAATCTCC TTGTCGATAT TGCCTATGCA TGGGCAGACC CACGGATCAG GCTGTCAGCG GGGCATGTCG AATGA
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Protein sequence | MGAFILRRIL LLIPMLLGAS LVIFLMLRLG PSDPAMDYLR LSKVPPTPLA LADARQMLGL DRPIATQYID WLGHAFRLDF GVSYATQRPV LPDLLYYLPA TLQLAGLALI LTFAISIPMG VWASRHRNKL PDHIVRLVSF LGVSMPNFWL GFLLVLVFSV QLGWLPAMGR GGFAHMIMPA IAIAFMSLSI NARLLRASML EAAGQRHVLY ARLRGLSRQR VERGHILRNA LLPIITATGM HVGELLGGTL VIESIFGWPG VGRYAVSAIL NRDYPVIQCF TLLMVGIFVT CNLLVDIAYA WADPRIRLSA GHVE
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