| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7603 |
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| Symbol | |
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| ID | 7380258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 545420 |
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| End bp | 546460 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641610 |
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| Product | ABC transporter substrate binding protein |
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| Protein accession | YP_002539907 |
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| Protein GI | 222102868 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAACT TCAACATCAC AAGACGTCAT TTCGGACTGC TTGCCGCCGG TGCGGCTGCG
GCCGCCACGC TGCCCTTCGC TGCCCGCGCC GCTGGTGGTA CGGCTGTTGC GGCGACCTTC
CCCGGAAACT GGGAGGATGG CTACCGCTTC GTGCTGACGC CGCTCGTCAA GGAAGCCGGT
TTCGACCTGA CAGTCGCTCC CGCCTTGGCG CAGGACCAGC TTGCCAAGGT GATGGCAAGC
CCCGGCAACC CGCCTTACGA TACCCTGCTG ATGTCGCCCG GTCAGATGGC CGTCGCCATT
GAGAACGACC TCATTCAGAA GATCGATCCG TCCAAGCTCA AGAACTGGAG CATGCTCGAT
CCGGCATTCC AGGGCGAGTA CGGACCGACC GTGACGGTCG AAGTCAATGG TATCGCTTAT
AATCCTGATC TGGTGCCGGC TCCGAAAGGC TATCGCGACC TGTTCGAAAA CCCGGCTTAT
AAAGGCCTGG TATCCTGGAC CGGTTTCGCC TCCAACACCG GCGTGATGGC CTATACCGAA
ATCGCCAGGA TTTTTGGGAA CGGTCCGACC GACATGGACG CCGTGTTCAA ACTGTTCAAG
GACAATCCCG AGCAGATCAA GGGCGTCGTC GCCAGCACAA ACCATCAGAT GACCTTGTTC
CAGCAGGGCG AAATCGCTGT CTTCATGTGC TCGACCGGCA ATGTTGCGCG CCTCAAGTCC
ATGGGCCTCA AAGCCGAGTT CGTCCAGCCG GAAACTGGCT CTCCGGCGGC TCCCGTCAAC
ATCCATCTGA CCAAGGGCGC GAAGAACATT GACGCAGCCT ATACCTATAT GGACGCCGCC
ATCTCAAAGG CCGCGCAGGA CAAGCTGAAA CTGCCACCAA CCGAGATGTT CCCGACCAAT
AAGGAGGTCG CTCTTACACC CGGCATTGAG GCCTATGTGA AACGCGAACA GCTGGCCACA
CTGGTCTACC CCGACTGGGC GGCGATCAAC AAGAACCGTG CGGAATGGAT CCGCCAGTTC
GATGCTCTCG TCGCCGGTTG A
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| Protein sequence | MQNFNITRRH FGLLAAGAAA AATLPFAARA AGGTAVAATF PGNWEDGYRF VLTPLVKEAG
FDLTVAPALA QDQLAKVMAS PGNPPYDTLL MSPGQMAVAI ENDLIQKIDP SKLKNWSMLD
PAFQGEYGPT VTVEVNGIAY NPDLVPAPKG YRDLFENPAY KGLVSWTGFA SNTGVMAYTE
IARIFGNGPT DMDAVFKLFK DNPEQIKGVV ASTNHQMTLF QQGEIAVFMC STGNVARLKS
MGLKAEFVQP ETGSPAAPVN IHLTKGAKNI DAAYTYMDAA ISKAAQDKLK LPPTEMFPTN
KEVALTPGIE AYVKREQLAT LVYPDWAAIN KNRAEWIRQF DALVAG
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