Gene Avi_7557 details

Gene Information

• Locus tag: Avi_7557
• Symbol: vgrG
• ID: 7380090
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 503466
• End bp: 505427
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643641572
• Product: vgrG protein
• Protein accession: YP_002539869
• Protein GI: 222102830
• COG category: [S] Function unknown
• COG ID: [COG3501] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR01646] Rhs element Vgr protein; [TIGR03361] type VI secretion system Vgr family protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGACG TTCTGTCACC GACCGATTTC ATTCAGGCAA GCCGTGTGCT GAAACTGTTG 
TCGCCCTTGG GTGAAGACCA GCTTTTGCCG GAGCGGATGA CGGTGGATGA GGGCGTCAAT 
CGTCTGTTCG AGATCACTGT GTCGGTGCGC GCCAAGCGCG AGGCAGTGAA GCCGGAAGAA 
CTGATCGGCA AGCTGGTCGA TGTGTCCCTG GAAATCCGCC AGGGCGAACT GGATGGGGAT 
GGCGTGCGCC GACCGTTCAA TGGACTGGTG ACAAACCTTT TCGAAGGCCC GCCAGTGACG 
CGTGGATTGC GGTCCTATAC CCTGACTATC CGTCCGCAAC TGTGGCTGCT GTCGCGCCGG 
TCCGATTGCC GGATCTGGCA GAATATGACC TCGATGCAGG TGATGGAAAC GCTGTTTTCC 
GAGCATGGCA TTCCAGCTGC CGCATCCGCC CCTCTGCACA AAACACCGCC ATCGCGTGAG 
TTTTCTGTCC AGTGGAATGA AACGGACCTC GATTACCTGC TGCGCCGCTT CGAGCAGGAC 
GGGTTGTTCT ATTGGTTTGA ACATGAAACC GGCGTTCACC GCCTGAAGGT CAGCGACAGC 
AAGGTGGCCT GGAGCAAGCC ATCGGCTGCG GCAGAAGGTG TCGACAAAGT CAGATTAGCC 
CAGGGCTCGT CGGACCGCAA CCATATCAAC GAATGGATGC GGCAATTCTC CTATGTCCCC 
GGCCAGCGCG CCGGTGCGGA CTGGAATTTT GAGACGCCGA GCACTGTGCC ACTGAACGTC 
ACGCCATCGC TGATCCAGAT GCCGGGGGCC AAGCAGCGCG AGCTTTACGA ATATCCGGCC 
CGCATCTCCG ATATCAAAGA GGCCGAAGTG GCCGAGACGT TTCGAACGCA AGCAACGGAA 
GCCGATCATG AGCGGGTGAC GGGCCAGTCC AATGTGCGCT TTCTGGAAGC CGGTCGCCGG 
TTCACGCCCT ATGAGGAACC GCATCCGGAA CACAAATACG AAGAGCATGT GATTACCCGA 
ATTGTGCATC GGGTGGTGGA CCGATCCTAT GAGACGGCCA GCAATGAGAT GGAATATGCC 
AACGCATTCG AGGCCATTCC CTCACGCGTT CCACTAACGC CGCACCGAGA GACCAAACGT 
CCGCGTATCG AGGGGACACA GGTGGCGATT GTCGCCGGAC CGTCGGGCGA AGAAATCCAC 
ACCGACAAAT ACGGACGCAT CAAGCTCTGG TATCCCTGGG ATCGCAAGGC AAAAAAGGAT 
GGCAGTGATA CTTGCTGGGT GCGGGTTGCC CAGAACTGGG CGGGCGGCCA GTGGGGAGGA 
CAGATCATCC CGCGCATCGG AATGGAGGTG ATGGTTGCCT TTATCGACGG CGATCCTGAT 
CGACCGCTGG TGACTGGCGT CGTGCCAAAC CCCAAAAACG CTGTGCCTTA TGATCTGCCA 
ACGAATAAGA CGAAGAGCGT GTTTCGGACG AACACGCATA AGGGCAAAGG CTACAATGAA 
CTGACCTTTG AGGACGAGAA AGACCGCGAG GAGGTCTATG TCCATGCGCA AAAGGACCAG 
AATATCAAGG TCGAGAACAA TTATTCGAAG CGCATCAACA CTAATAAGGT GGAGAGTGTA 
GGCCACAACA AAGCAACTGA AGTAACAAAC AATCATTATG AAGTTGTTGG CGGCGATATG 
GATATTAGAG TTGGGCCTTC AAACAAATGG AGCATTACGC CGCAGCAGGC CGATACAATG 
GCCGCAGGCA TCGGCCAAGC CACATACGCG TTTGGAGAAA AGGGCCAATC GCCGATCGGT 
GAGGGCAATC TCCATATTGT CGTTCAAAAA AACAAAAGTC AAAAAATTGG CGATACGCAC 
ACCGAAGATG TTGGTCGTCT GAAAATAATA GATGTGGGTG ATGAATACAG TTTAAGGGCA 
GTTAATAACG TAGTGATTGA AGCAGGAAAA AACTTGTCTT GA 

 

Protein sequence

MDDVLSPTDF IQASRVLKLL SPLGEDQLLP ERMTVDEGVN RLFEITVSVR AKREAVKPEE 
LIGKLVDVSL EIRQGELDGD GVRRPFNGLV TNLFEGPPVT RGLRSYTLTI RPQLWLLSRR 
SDCRIWQNMT SMQVMETLFS EHGIPAAASA PLHKTPPSRE FSVQWNETDL DYLLRRFEQD 
GLFYWFEHET GVHRLKVSDS KVAWSKPSAA AEGVDKVRLA QGSSDRNHIN EWMRQFSYVP 
GQRAGADWNF ETPSTVPLNV TPSLIQMPGA KQRELYEYPA RISDIKEAEV AETFRTQATE 
ADHERVTGQS NVRFLEAGRR FTPYEEPHPE HKYEEHVITR IVHRVVDRSY ETASNEMEYA 
NAFEAIPSRV PLTPHRETKR PRIEGTQVAI VAGPSGEEIH TDKYGRIKLW YPWDRKAKKD 
GSDTCWVRVA QNWAGGQWGG QIIPRIGMEV MVAFIDGDPD RPLVTGVVPN PKNAVPYDLP 
TNKTKSVFRT NTHKGKGYNE LTFEDEKDRE EVYVHAQKDQ NIKVENNYSK RINTNKVESV 
GHNKATEVTN NHYEVVGGDM DIRVGPSNKW SITPQQADTM AAGIGQATYA FGEKGQSPIG 
EGNLHIVVQK NKSQKIGDTH TEDVGRLKII DVGDEYSLRA VNNVVIEAGK NLS