| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7531 |
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| Symbol | dppB |
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| ID | 7380071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 476889 |
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| End bp | 478061 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641553 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002539850 |
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| Protein GI | 222102811 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.286515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGGAAGA AGAATGGAAA AAAATCTGAA AGTCTGTCCC ATAATTGTCG CTGGCGGGCT
GCAAATGGCA ATTTCTGCGC TTCCGGTGCT CACGTACTTG AGTACGCTCC GCTCCGGTTC
TCGAAATCAC CATTTTCGCC ACGCCAGCAC CAATTCTCGA ACAGACTTTT ACCGTTTGTT
GAAACAGAGC CGCTGAAAGG AGGTAACGAC GTGACCATGC AAGCCATGCC CTATGTAAAA
GCCATCTCAA CACGGCTTTT GGCCGGAATT CCCGTCTTCC TCCTCGTCAC CTTTGGTGCG
ACGGCGCTGT CCAACCTTGC ACCGGGATCA CCGGCGCAGC TGATATTGGG TGATAATGCC
ACCGCTGAAC AGGTGGCGGC TCTCAACCAG ACCTATGGCT ATGACCTGCC GGTTTGGGAA
CGCTATCTGA AATGGCTTGG CGATTTGTTT CACGGTGATC TTGGGCAAAC GCTGTTTTCC
CAACAGCCGG TTTTGCAAGT GGTGATGGAT CGCGCCACTG TTACCTTTGA AGTCGCAGCT
CTTGCCATGC TGGTGTCGAT GCTTGGCATA CCGCTTGCCA TGTTCACCGC AAGCCATCCC
GGCAAGCTCA CCGACCGGGC CTTCCGCTCT GTGGCCTCCG TGGTGTTGGC CGTTCCAACA
TTTGTGATCG TGGTGCTTTT GAGCTACCTG TTTGCCATCG TGCTGCGCTG GTTACCTGCA
ACGGGTTGGG TCAATTTCTC CGAAAATCCG CTGGCCAATC TCTGGTATGT GGCCCTTCCA
GTGCTATGCC TCAGCCTGCA CCAGACGGCC TATCTCTACC GTGTGGCCCG CAATGAATTC
GTCACCACCC TTCAAGAAGA TTTCATTCAG GTGGCGCGGG CCAAGGGCCT GCCGCTTGGC
TATATCCTGT TTCGCCACGT GCTGCGTCCA TCCATGCCGC AGATCCTTAC CGTCATGGGC
CTGTCGCTCA CCTATATGCT GGCCGGCTCC TTTGTGGTTG AGAGCTATTT TGCCGTACCG
GGCATTGGCT GGACTGTGCT CACGGCGGTC AAAAGCCACG ATATTCCGCT GGTGCAGGCG
ATTTTGTCGC TCACTGTCGT GGTCTTCGTC ACCATCTTCA TGCTGGTGGA TATCGGCTAT
GCCATCATCG ATCCACGGGT TAATGTCACA TGA
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| Protein sequence | MRKKNGKKSE SLSHNCRWRA ANGNFCASGA HVLEYAPLRF SKSPFSPRQH QFSNRLLPFV
ETEPLKGGND VTMQAMPYVK AISTRLLAGI PVFLLVTFGA TALSNLAPGS PAQLILGDNA
TAEQVAALNQ TYGYDLPVWE RYLKWLGDLF HGDLGQTLFS QQPVLQVVMD RATVTFEVAA
LAMLVSMLGI PLAMFTASHP GKLTDRAFRS VASVVLAVPT FVIVVLLSYL FAIVLRWLPA
TGWVNFSENP LANLWYVALP VLCLSLHQTA YLYRVARNEF VTTLQEDFIQ VARAKGLPLG
YILFRHVLRP SMPQILTVMG LSLTYMLAGS FVVESYFAVP GIGWTVLTAV KSHDIPLVQA
ILSLTVVVFV TIFMLVDIGY AIIDPRVNVT
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