| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7517 |
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| Symbol | dppB |
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| ID | 7380061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 464930 |
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| End bp | 465883 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641543 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002539840 |
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| Protein GI | 222102801 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.636938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGATCACTT ATCTGTTGAA ACGGCTGGCT ATTGCTGGCT TCCTGATGCT GCTGGTATCC
GCGCTGGTGT TTTTACTGAT GCGCGGATTA CCGGGCGATC CTGCGCTGAT CGCACTCGGC
GATTCCGCAT CCGCTGATGC CATTGAGGCT TATCGCAACC GCATGGGGCT CAACGATCCC
TTGATTGTGC AGTATGTTCA TTGGATCACG GGCATCTTGC TGCGGTGGGA TTTCGGCAAG
TCGGTGCTGA ACGAGCAGAA TGTCTCGCTC ATGATCAGCC AAAGGCTGCC CAATACACTG
ACGATTGGCA TTCCCTCGAT CATTTTGGGG ATCATTCTGG GCCTGCCGAT CGGCATTTTG
AGCGCAATCA CCAGAGGTAC GTGGATCGAT CAGAGCTTCA CTCTGATTGT GAACGCTTTT
CTGGGAACGC CGCGGTTTCT GGTGGCGATT TTTGGCGTCT TCATTCTCGC CTTCAAGCTG
AGGCTCATTC CTCTTCAGGG CTACACGCCG CCGTGGGTGG ATTTGGCGGC CTATGCGCAC
AAAGCGATAT GGCCTGTCTT TATCAACAGC ATCTATATCT TCGCGGTTCT GGCCCGCTAC
ACACGCTCCA ACCTGCTTGA AGTGATGACG CAGGATTATA TCCGAACGGC GCGCGCCAAC
GGCCTGTCCG AGACGCGGGT TATTTTCCGC CACGCCCTGA AAAACGGTCT GATCCCGGTT
GTGACGATCA TCGGGTTGCA GATGCCGCAA ATTATCGCAG GCGCAGTGAT TATCGAGTCC
ATCTTCAACA TCCCCGGCGT TGGGCAACTG GTGCTCAATG GCGTTTTAAA CCGGGATTAT
CTGGTTGTGC AGGCGGCGGT GCTGGTGATT TCCATGGCGA CAATTGCATC CAACCTGATG
GTGGACCTGA CCTATGCCCT GATCGATCCG CGCATAAAAA GAATGGCATG GTGA
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| Protein sequence | MITYLLKRLA IAGFLMLLVS ALVFLLMRGL PGDPALIALG DSASADAIEA YRNRMGLNDP
LIVQYVHWIT GILLRWDFGK SVLNEQNVSL MISQRLPNTL TIGIPSIILG IILGLPIGIL
SAITRGTWID QSFTLIVNAF LGTPRFLVAI FGVFILAFKL RLIPLQGYTP PWVDLAAYAH
KAIWPVFINS IYIFAVLARY TRSNLLEVMT QDYIRTARAN GLSETRVIFR HALKNGLIPV
VTIIGLQMPQ IIAGAVIIES IFNIPGVGQL VLNGVLNRDY LVVQAAVLVI SMATIASNLM
VDLTYALIDP RIKRMAW
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