| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7506 |
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| Symbol | nocM |
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| ID | 7380052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 455701 |
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| End bp | 456381 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643641534 |
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| Product | ABC transporter membrane spanning protein (nopaline) |
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| Protein accession | YP_002539831 |
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| Protein GI | 222102792 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACATCA ATATCATCAC CTATGCTGTA CCCTTTCTTC TCACCGGTGC CAAAACGACC
CTGCTGATTG CCGTGTTCGG CATTGGGTTT GGTCTGCCGT TTGGGGTCTT GCTTGCCTTG
GGTCGCGGCT CGCACAATCA TGTCCTTCGC CGCACCTGTG ACTTCTACTG CGCCATCTTT
CGTGGCACGC CCATGCTGGT GCAGATTTTT GTGATTTACT ACGGACTGGC GCAGATCAGT
TTCGTGCGCC AGAACCCCAT CCTCTGGTGG ATGATTGGCA ATGGGTTACA TGCGGCCATT
CTCGCCGTCA TCCTCAACAC CTGCGCCTAC ACCGCCGAAA TCTTCCGCTC AGCTCTCCTG
TCCCTGCCCC GTGGCCTGAT TGAAGCTGCC GAAGCCTGTG GCATGTCTGG CTGGCATATC
TTCATCCGCG TCAAATTTCC GCTCGCCTTG CGTCAGGCTC TGCCTGCTTA CAGCAGCGAA
GTGGCGATTA TTGTGAAGGA ATCCAGCCTT GCCTCCACCA TCACCGTGCT GGAAATCACT
GGTTACGCCA AGCGATTGAT GAGTGAGACC TTTGCCATCA TGGACATCTT CATCATCACC
GCTGCTTTCT ATCTCGCCAT CAATGTCATT GCCTTGATGG CGCTGAAATT CATCGAGCGG
CGACTGTCGT TCAGCCGATA A
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| Protein sequence | MDINIITYAV PFLLTGAKTT LLIAVFGIGF GLPFGVLLAL GRGSHNHVLR RTCDFYCAIF
RGTPMLVQIF VIYYGLAQIS FVRQNPILWW MIGNGLHAAI LAVILNTCAY TAEIFRSALL
SLPRGLIEAA EACGMSGWHI FIRVKFPLAL RQALPAYSSE VAIIVKESSL ASTITVLEIT
GYAKRLMSET FAIMDIFIIT AAFYLAINVI ALMALKFIER RLSFSR
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