| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7488 |
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| Symbol | chvI |
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| ID | 7380042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 446416 |
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| End bp | 447102 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641526 |
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| Product | two component response regulator |
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| Protein accession | YP_002539823 |
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| Protein GI | 222102784 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.461205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAATG TCCTCTTGAT TGACGATGAC ACGGAGCTGA CCACGATTCT GAGTGAGTAC
CTGACAGGGG AGGGTTTCAC GGTATTCGCA GTGGTCAATG GCAAGCAGGG ACTGGCCGAG
ATCGCTGCCC GCAGGATCGA TATGGTCGTC CTTGATATCA TGATGCCGCA AATGAACGGA
ATTGATGTTC TGCAGCGGAT ACGCCGTGTC AGCGAGGTCC CCGTCCTCAT GCTCACCGCC
CGTGGCGATG ACGTAGACCG CATTTCCGGC CTCAACCTGG GTGCCGATGA TTATGTGGCG
AAACCCTGTT CATCCGGTGA GCTTGTGGCC CGACTACGCG CTATCCTCAG GCGCGTTGGA
CCAGACAAGG ATGTCGAGAC TGAGCAATTA CGATCCGGCG ATCTGGTTCT GAACCCGGCC
AACAGAACTG CGGAATGGCG AGGCCTGCCG TTTGAACTGA CAGGAACGGA ATTTATCCTG
CTTGAAGTCC TGGTGCGCAA TGCGGGACAG CTGATTTCAA GGCAGTTTAT CTCAAAGCAG
GCATTTGGCC GTCCGCTCGT CGCCTTTGAC CGGCGTATCG ACGTCCACAT CAGCAGCGTG
CGGCAGAAAC TGGGCCGACG CGAGGACGGG CAGTCCTGGA TCCAGTCCGT TCGCGGGCAG
GGTTATCAAC TCATCCGGGA TGTTTGA
|
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| Protein sequence | MTNVLLIDDD TELTTILSEY LTGEGFTVFA VVNGKQGLAE IAARRIDMVV LDIMMPQMNG
IDVLQRIRRV SEVPVLMLTA RGDDVDRISG LNLGADDYVA KPCSSGELVA RLRAILRRVG
PDKDVETEQL RSGDLVLNPA NRTAEWRGLP FELTGTEFIL LEVLVRNAGQ LISRQFISKQ
AFGRPLVAFD RRIDVHISSV RQKLGRREDG QSWIQSVRGQ GYQLIRDV
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