| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7484 |
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| Symbol | |
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| ID | 7380040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 443670 |
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| End bp | 444725 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641524 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002539821 |
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| Protein GI | 222102782 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.832684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTTTT CCAAGACCGA TCAAGCGCAA ACCACGCAGT CTGCGGCGCT GACAGTGTCC
GTTACCACAC CACAAACATT GCAATGGGCA GATACGATTG CGGTCAGCGG CTGGTTGGCG
GCGTGGCAGG AAGCAATTGT TGCCGCAGAA ACCGGCTCTT TAAAGATCAC GGATATTCTG
GTTGATATCG GCTCTGTGGT GCAGAAGGGC GATGTGCTGG CGAGATTGTC GGATGCAAGC
GCCATCGCCG ATGTGCACAA GCAGGAAGCG GCTGTCGCCT CTGCCAAGGC CACGCTTGCC
AAAGCGAAAG CCGATAGCGT GCGGGCAAAA AAGGTCACGG GTTCTGGTGC GCTGTCGGAT
CAGGACACCC TTGGCTATTA CATCACCGAA CAGACAGACG CAGCCGATCT CGCGTCTGAT
GAAGCCTCGC TTGAATCAAG CAAGATCACG CTTTCGCAGA CAACAATAAC AGCACCCGAC
AGCGGCATTG TTTCATCGCG TTCCGCCGAT CTTGGCAATG TGGTTTCAGC CGGAACCGAG
CTGTTTCGCC TCGTGCGCCA AGGGCGAGTT GAGTGGCAGG CGGAAGTTCC GTCCTATCAG
CTGCCGCGCA TCCATCCCGG TGCCAAGGCC ACCATTCATG ATCAATCGGG CCATGATCCA
TCGGGCCATG ATCCATCGGG CAAGAGTTTT GAAGGCACCG TCCGCCTTGT CAGCCCGATT
GTCAGCAATG ACACGGGACG CGGCACAATC TATGTGACCC TTCCAAATGA TCCCGATATC
CGGGTTGGCC TCTACGAATC CGGCACCATT GAGCTTGCCG TCACGCCCGC GCTCACCCTG
CCCGAAACCG CTTTGGTGTA TAGTGACGGC ATCAATTACG TCTTCAGGGT CAATGCCGAT
AACCGGGTTA CGCGCTTGCG TGTGGACATT GGCCGACGCA ATAACGGCCG GGTTGAAATC
CTTTCAGGGA TTGAGGCTCA AGCACAAATT GTGGAAGCAG GGGGCTCCTT CCTGTCCGAC
AATGATCTCG TGCTTGTGAA GGCTGCCACC AAATGA
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| Protein sequence | MGFSKTDQAQ TTQSAALTVS VTTPQTLQWA DTIAVSGWLA AWQEAIVAAE TGSLKITDIL
VDIGSVVQKG DVLARLSDAS AIADVHKQEA AVASAKATLA KAKADSVRAK KVTGSGALSD
QDTLGYYITE QTDAADLASD EASLESSKIT LSQTTITAPD SGIVSSRSAD LGNVVSAGTE
LFRLVRQGRV EWQAEVPSYQ LPRIHPGAKA TIHDQSGHDP SGHDPSGKSF EGTVRLVSPI
VSNDTGRGTI YVTLPNDPDI RVGLYESGTI ELAVTPALTL PETALVYSDG INYVFRVNAD
NRVTRLRVDI GRRNNGRVEI LSGIEAQAQI VEAGGSFLSD NDLVLVKAAT K
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