| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7454 |
|---|
| Symbol | |
|---|
| ID | 7380477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 420492 |
|---|
| End bp | 421757 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643641505 |
|---|
| Product | transcriptional regulator ROK family |
|---|
| Protein accession | YP_002539802 |
|---|
| Protein GI | 222102763 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACACTTC TGGATCGGTT TGATGGAGGC TTTGCCCGCG ACGGTGAGGA CATTATTGCG
GGCAGCCGGA TTGAAGATGC CCGCATTCAC AATCGTCGTC TGGTGTTTGA AACCATTTTT
CAACGCGGCC CCATCAGTCG GGTGGAGATT TCAGCCATTG TCGGGCTGAA ACCCCAAACC
ATTTCGTCCA TCACCCGCGA ACTGCTCGAG CAGGAATTGA TCGTCGAGGC CGGACGGTCC
TCCGGTCTTC GCGGTCAGCC GCAAATCTAT CTGGAGGCCA ATGCCGAAGC GGGCTTTTCA
ATCGGGGTTC ATCTGGATCA GAACCAGTGT CATATTCTGG TGTTTGACCT GAAACGGCAA
GAACGCGCCC GCAAATCGAT GCGGTGTGAT ACGGCAAACC CCGATGTGAC CGTGCGGATG
CTGGCGCAAA CCATAACAAC ATTGCTGCAC GACAATGCCC TGCCTGCTGA ACGGATCTGG
GGCCTTGGTC TGGTGCTGCC CACATTCGGC TCCGATGTCT ACGATTTCGA TTTTTCCATG
CGGCATTGGG AGGCCTGGCG CGATGCATCC TTTGCCGAAG ACCTGCAACG CCTGACCGGC
TTTGCCGTTC TGGTGGAAAA TGACGGAACA GCGGCAGCCA TTGGCGAGCG CCTTCACCGC
CACGATGCAC AGGAGGCGTC GTTTGCCTAT TTCTACATCG GCCATGGTGC CGGTGCCGGG
CTAATTATTG ATGGCTATCC CTTCAAGGGT GTTGGCGGAA ATGCCGGCGA AATCGGGCTG
TTGCCAATCC TTGGCCTTGG CGCCAATCCG GTCTGGCCGG ACAATCCCAG CAGCGCTGTT
CAGGGCGGTG TTCTTTCTAT TGGCGGGCTG GCAGCCGCTT GCGGTCTATC AGAGCAGTCC
ATGGATGAGC AGAGCATCTT GAGCCTGCTG GAGCGGCGTG ATCATCGGTT GATGGATTGG
CTGGCGTCTG CGGCCAGTGT ACTGCGTGAT GTCTGCGCAG TCATTGAAGT GATGTTCGAT
CCCGGCTTTA TTGCCGTGGG CGGTGCGTTG CCACGGGCGC TGGTGGAACG GCTGGTGGAT
CGCGCCTATC CGCTGCGCCC CACGCCATCG GCTCGGCGTG ACCGGGCCTT GCCTCGGCTT
TTGCCTGCAA CGCTGATTGA GGATGCGGCG GTGACAGGGG CCGCGATGTT GCCGATTTTT
GTCACCACCA GCCATAATTT CCGCCATCTC TATTTCCGGC AGATTCTCGC AGACGACCGG
TCATGA
|
|---|
| Protein sequence | MTLLDRFDGG FARDGEDIIA GSRIEDARIH NRRLVFETIF QRGPISRVEI SAIVGLKPQT
ISSITRELLE QELIVEAGRS SGLRGQPQIY LEANAEAGFS IGVHLDQNQC HILVFDLKRQ
ERARKSMRCD TANPDVTVRM LAQTITTLLH DNALPAERIW GLGLVLPTFG SDVYDFDFSM
RHWEAWRDAS FAEDLQRLTG FAVLVENDGT AAAIGERLHR HDAQEASFAY FYIGHGAGAG
LIIDGYPFKG VGGNAGEIGL LPILGLGANP VWPDNPSSAV QGGVLSIGGL AAACGLSEQS
MDEQSILSLL ERRDHRLMDW LASAASVLRD VCAVIEVMFD PGFIAVGGAL PRALVERLVD
RAYPLRPTPS ARRDRALPRL LPATLIEDAA VTGAAMLPIF VTTSHNFRHL YFRQILADDR
S
|
|---|
| |