Gene Avi_7418 details

Gene Information

• Locus tag: Avi_7418
• ID: 7380450
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 391027
• End bp: 391692
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643641478
• Product: gamma-carboxymuconolactone decarboxylase subunit
• Protein accession: YP_002539775
• Protein GI: 222102736

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0051102
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTCCT ACTCACCAGC CTATGTTGCG GCCTATCTCG ATTTCTCCGT CTATTCCGAC 
GAGCAAGGGT CGATATCGCC AAAACTGCGC GAATTGATCT ATGTGGCAAC GAATTGTTCG 
CCCACACATA TGTTCGAAAA GGGGTTTAAA AACCACGCCC GGCAGGCACT GGATTTGGGG 
GCTAGCCCGT CAGAGCTTCT TTCCGTAGTC GCAACGGTTA GCGCGATGGG CATTCACTCT 
TATCTGCTCG CCGCTGAAGC AATTGCCGAG TTCGCGCCCG GTGAGATTGT TGTCGATGAG 
CCGTCTGCGA CGATGGTGCG CAAGGAGCAT CTTGCCGTTT TCGGGGCCGT CTTGGAAGAA 
GTTCAGGCCG GAATAAAGCT TGATCCGAAG TTCTATCAAT GCTGGCTCAA TTTCGCGGCC 
GCCCCGATGC GGGGTCCAGA TGCGACACTG TCGATGAAGG AGGCGCATCT GATTGCGCTT 
GCGGTTCATG CGCAGGTCAC ACAACTCAAT CCGGTCGGTG TGCGTCAGCA TGTGCGGGCA 
GCCTTGGAGC ATGGAGCAAG TGCACGGGAA GTGCTCGATG TGTGCAAACA GATATCGAGC 
ATGGGCATTC ACGCCATGGT TTTTGGCCTG CCAATCATCA ATAGCTTAAC ACGGGGAGGT 
GTTTGA 

 

Protein sequence

MLSYSPAYVA AYLDFSVYSD EQGSISPKLR ELIYVATNCS PTHMFEKGFK NHARQALDLG 
ASPSELLSVV ATVSAMGIHS YLLAAEAIAE FAPGEIVVDE PSATMVRKEH LAVFGAVLEE 
VQAGIKLDPK FYQCWLNFAA APMRGPDATL SMKEAHLIAL AVHAQVTQLN PVGVRQHVRA 
ALEHGASARE VLDVCKQISS MGIHAMVFGL PIINSLTRGG V