| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7398 |
|---|
| Symbol | |
|---|
| ID | 7380435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 372196 |
|---|
| End bp | 373212 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643641463 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_002539760 |
|---|
| Protein GI | 222102721 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCAT CGCCATCCCG AACGGGATAC TCGAACACAC TTCTGGTGAT TGATGGACCG
ACCGCTGAGT CTCTGGTCTC CATTGATGAG GCCATCGTGC TTGCGGATCT CGCCTTGAGA
AAAACATCGG ACGAGACAGC ACAACAAGAC ATCCGTCGGA TTCTGACCCT TCCCGGTGCA
GCCGGAACAT GTCTCTCCAT CATGTATGGA TCAGCAAGCG AAGCCGAGCC ATTTGGGGCT
AAAGTCCAGT CGGTTTACCC GCAAAACTTT GAGAATGGAT TGCCCTCCCA TCAGGGTGGC
GTTCTGCTTT TTAATCGGCA GACTGGACGG CCCGATGCTC TGATTAACGC CACCGCCATT
ACAGGTCTGC GGACACCGGC GGCAAGCGCG GTGGCCACGC GTGCGCTTTC GCGCCCCGAC
GCCTGCGAAC TGGCACTCAT CGGTTATGGT GAGCAGGCCG AACGGCATAT TGCAACGATC
CGTGCGGTCC GCGACATATC CCGTGTGCGC GTGTGGGGTC GAAATCCCGA GAAGGCAAAG
TTTTTCGCAG ATCACCAGAC CAGGCTGGGC ATCCCGACGG TTCCCTATGG GACGGCTCGA
GCGGCGGTGG AGGGAGCGGA CATCGTCTGC ACGGTAACAT CAGCAAAGTC GCCTGTGCTG
ATGGGAGAAT GGCTGACGCC CGGCACCCAT ATCAACGCGG TTGGAGCGAG TGTCGCAGCT
CTCCAGGAGG TGGACCTCGA ATGTGTGAAG CGCTCGCGCA TCTGGGTCGA TTACATGCCA
ATGGCAATGG CAGCAGCGTC AGACATTTTC GAGCCTTTAG AAAAAGGCAT CATTGGCCCT
TCAAACCTGA TCGGTGAGAT TGGCGCAGCA TTGAATGGCA CCATCACCGG GCGGACCTCG
ACATCTGAGA TCACCCTCTA TCGCTCGCTC GGTGTTCCTG CCCAGGACAT CCTATTTGCC
AACTTCATTT TCCAGAAGGC GAGAGGCCTT GGTCTCGGCG TCGAAGTATC ATTGTGA
|
|---|
| Protein sequence | MSSSPSRTGY SNTLLVIDGP TAESLVSIDE AIVLADLALR KTSDETAQQD IRRILTLPGA
AGTCLSIMYG SASEAEPFGA KVQSVYPQNF ENGLPSHQGG VLLFNRQTGR PDALINATAI
TGLRTPAASA VATRALSRPD ACELALIGYG EQAERHIATI RAVRDISRVR VWGRNPEKAK
FFADHQTRLG IPTVPYGTAR AAVEGADIVC TVTSAKSPVL MGEWLTPGTH INAVGASVAA
LQEVDLECVK RSRIWVDYMP MAMAAASDIF EPLEKGIIGP SNLIGEIGAA LNGTITGRTS
TSEITLYRSL GVPAQDILFA NFIFQKARGL GLGVEVSL
|
|---|
| |