Gene Avi_7388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_7388 
SymbolnrdF 
ID7380426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011981 
Strand
Start bp362792 
End bp363781 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content55% 
IMG OID643641454 
Productribonucleotide-diphosphate reductase subunit beta 
Protein accessionYP_002539751 
Protein GI222102712 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0208] Ribonucleotide reductase, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACATAC AGATGAAGAC CAACACCCCG ACGCAAACCA AGCCGGTGCG AGCGATCAAC 
TGGAACCGCA TCAACGACGA CAAGGACCTG GAGGTCTGGA ACAGGCTGAC CGGTAATTTC
TGGCTGCCGG AGAAGGTGCC GTTGTCAAAC GACATTCCAT CCTGGGCGGC GTTGAAGCCG
GAAGAACAAC AGTTGACCAT CCGCGTCTTC ACGGGGCTGA CCCTGCTCGA TACCATACAG
ACGAGCATCG GTGCGCCAAC ATTGATGGAG GATTCCATCA CGCCGCATGA GGAGGCGGTC
TATTCGAACA TTTCGTTCAT GGAAGCGGTG CATGCCCGTT CCTATTCCTC GATCTTTTCG
ACCCTGTGTT CGACATCCGA CGTGGATGAT GCCTATCGCT GGTCCGAAGA AAACGAGTTT
CTGCAAAAGA AGTCGGCGCT GATCCTCGAA CACTACCGCA ATCCTGACCC GCTGAAACGC
AAGATCGCCA GTGTGTTCCT GGAAAGCTTC CTGTTTTACT CCGGCTTCTA TCTGCCGATG
TTTTGGTCGA GCCGCGCCAG GCTCACCAAC ACGGCAGACA TGATCCGTCT CATCATCCGC
GACGAGGCTG TACATGGCTA TTACATCGGC TACAAGTTTC AGCGTGGTCT CGAGCCCTTA
AGCGAGGAGC AGCGGCAGGA AACCAAGGAC TTCGCCTTCG ACCTGCTGCT TGAGCTCTAC
GACAACGAGG CCAAATACAC CGAGGCGCTC TATGACGGTG TCGGACTGAC AGAGGACGTC
AAAAAATTTC TGCATTACAA CGCGAACAAG GCGCTGATGA ACCTCGGCTA CGAGGCTCTG
TTTCCGCCGG AGGCCTGCAA GGTCAATCCG GCAATCCTGT CGGCACTCTC GCCGAATGCC
GATGAGAATC ATGATTTCTT TTCGGGCTCA GGCTCGTCCT ATGTCATCGG CAAGGCAGTT
GCGACTGAGG ACGAGGACTG GGATTTTTAA
 
Protein sequence
MNIQMKTNTP TQTKPVRAIN WNRINDDKDL EVWNRLTGNF WLPEKVPLSN DIPSWAALKP 
EEQQLTIRVF TGLTLLDTIQ TSIGAPTLME DSITPHEEAV YSNISFMEAV HARSYSSIFS
TLCSTSDVDD AYRWSEENEF LQKKSALILE HYRNPDPLKR KIASVFLESF LFYSGFYLPM
FWSSRARLTN TADMIRLIIR DEAVHGYYIG YKFQRGLEPL SEEQRQETKD FAFDLLLELY
DNEAKYTEAL YDGVGLTEDV KKFLHYNANK ALMNLGYEAL FPPEACKVNP AILSALSPNA
DENHDFFSGS GSSYVIGKAV ATEDEDWDF