| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7376 |
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| Symbol | xylH |
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| ID | 7380416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 351152 |
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| End bp | 352411 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643641444 |
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| Product | ABC transporter membrane spanning protein (xylose) |
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| Protein accession | YP_002539741 |
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| Protein GI | 222102702 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.271597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA TTTCAAACCC TGAACCCAAG TCCTCCCAAG CCTTGGACCG CAGCGATGAG
CGCGTCACCC ACGATGATGG TGTGCTGGCC ATGCTGCGCA GTTTTATCAA TCGGATCAAA
TCGGGCGATC TGGGCATGTT GCCAGTTGCC ATTGGGCTGA TTGTGATTTC CACCGTGTTC
AGCATTCTCA ATCCGGTTTT TCTGGCACCC AACAATCTGG TCAATCTGCT GTTTGATTGC
GCAACGGTGG GCATTATTTC GCTGGGCATT GTCTGCGTGC TGCTGTTGGG TGAGATTGAT
CTCTCGGTTG GCTCCATGAG TGGTCTGGCC TCGGCTATCA TTGGCGTGTT GTGGGTCAAT
TCCGGCCTTC CGGTGGTTGT TGCGATTTTT GCAGCGCTGG TCACAGGTGC TGCCGTGGGG
GCGCTTTACG CTGTGATGTA TAATCGCATG GGCATGCCAA GCTTTGTCGC CACGCTGTCT
GGCCTGCTGG CCTTGCTGGG CATGCAGCTC TACATTCTCG GCCCAACGGG CAGTATCAAT
CTGCCCTATG CCTCACCTCT GGTGCGGTTT GGCCAGATTT TGGTGATGCC GCATTGGCTG
TCCTTCACGC TGGCTTTGGT GCCCGGCATT GTGATGGTTG TGTTTGGCTT AAGCGTGCGC
AAGCGCCGCC AAGCGGTCAA CCTGTCCTCA AAGCCCTTGA GTGGCTTGCT CATCAAAGCC
GCCATCCTCA CGCTTGGCTT CGAATTTGCA GTCTATTATC TCAATCTCGG ACGCGGCGTG
CCCTGGATGT TTGCGCTGTT CGTGGCGCTG GTGGTGGTGG TCAATTACCT GCTGACCAAG
ACACAATGGG GCCGCTCAAT GTTTGCCGTG GGTGGCAATC GTGAAGCCGC ACGCCGCGCT
GGTATCAATG TCCGCCGCAT TTACATGAGC GCCTTTATGC TGTGCTCCAC CCTTGCAGCG
CTTGGTGGCG TGTTGTCGGC ATCGCGCCTT GCATCCTCCA GCCAGCAGGC TGGCACGGGT
GATGTGAATT TGAACGCCAT TGCCGCCGCC GTGATTGGTG GCACCAGCCT GTTTGGCGGG
CGTGGCAGTG CCTATTCGGC CCTGCTTGGG ATCATCGTCA TTCAGGCGAT TTCCAATGGT
TTGACGCTTC TCAACCTCAG TTCATCACTG CGCTACATGA TCACCGGGGC AGTGCTTGCC
ATTGCCGTGA TTGTGGATTC GCTCGCGCGC CGCTCCCGTG TCAGTCACGG CCGCGCCTAA
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| Protein sequence | MSNISNPEPK SSQALDRSDE RVTHDDGVLA MLRSFINRIK SGDLGMLPVA IGLIVISTVF
SILNPVFLAP NNLVNLLFDC ATVGIISLGI VCVLLLGEID LSVGSMSGLA SAIIGVLWVN
SGLPVVVAIF AALVTGAAVG ALYAVMYNRM GMPSFVATLS GLLALLGMQL YILGPTGSIN
LPYASPLVRF GQILVMPHWL SFTLALVPGI VMVVFGLSVR KRRQAVNLSS KPLSGLLIKA
AILTLGFEFA VYYLNLGRGV PWMFALFVAL VVVVNYLLTK TQWGRSMFAV GGNREAARRA
GINVRRIYMS AFMLCSTLAA LGGVLSASRL ASSSQQAGTG DVNLNAIAAA VIGGTSLFGG
RGSAYSALLG IIVIQAISNG LTLLNLSSSL RYMITGAVLA IAVIVDSLAR RSRVSHGRA
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