| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7333 |
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| Symbol | xylR |
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| ID | 7380545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 308759 |
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| End bp | 309997 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643641408 |
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| Product | transcriptional regulator ROK family |
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| Protein accession | YP_002539705 |
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| Protein GI | 222102666 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.777394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTATT CCGGAGCCAA TGGCGAACAG GCCGCAGCCC TCAACAGGGC CATCATCCTG
AACGCCATTC ACCGTGGTGG GCCGATCTCG CGCACCGAAA TTGCCAAGCT TTCGCGCCTG
ACTAAGCAGG CTGTCACCCG GATTGTCGAT AAGCTGCTGG ATGAAGGGCT GGTGATGGAA
GCGCGCCGCC GCCAAGGCTT GCGGGGTCAA CCCGCCATCG AGCTGGAGAT TGACCCGGAA
GGTGCCTTTG CCATCGGAGC CAATATTGAC CGTGATCACC TGACCATTGT GGCGGTGGAT
GCGGTGGGCA ATGTGCGCGG GCGTATTCAC CATGAAGCGC GGTTTTTGCT GCCGGATGCC
TTTGTAAAGC TGATGGAAGA CGCCGTATCG TCCTTCCTGC GTCGCAAGGT TATCCACGAA
TCGAGGCTTG CGGGCATTGG CCTTGCCATT CCCGACTGGC TAGGTGAGGT GCAGGTGATT
GGCCTGCCAG ACACATATAG CCAGTGGAAC GGCTTTGACG TGCGCGCCGC GCTGTCGCAT
ATCACCGACC ATCCCATCTA TATCGACAAT GACGCCAATG CGGCGGCTTT GGGCGAGATT
GAATATGGGC TGGGCACCGA AATGCGCAGT TTTTTCTATA TTCTCATATC GGCCTGTCTT
GGCGGTAGTC TGGTGATTGA CGGTATGCGC CACAAGGGCG CAGGCGGGCT GGGTGGGGAA
ATCGGCTGGT TGCCCACGGC GGTCACAACC GGCCCATTGG CCGGTGAAAC CAGACCGTTG
GGCGATATGC TGTCGATGTT TGTGCTGCTC GATTACCTTG CTGACAATGG TGTGGATGTG
GCGACACCTG CAGATCTGTT GACGCTGGAT GCACGCGGAC GCGCCCTTCT CAGCGGTTGG
CTGAAGAAAA TGGCCGTCAA CCTTGCCGAA GCTGTCAGCG ACATCGGCAT GGTGGTGGAC
CCCGATGGCA TTATTCTGGG TGGACGCCTG CCGGTGCGGC TGATTGATGA ATTGCTGCTC
TACGTGCATG AGGAAATCAG CCGTCGGGGC GCGTTGGCCC CAAGCCTACA CCGTGCGGCA
GCCTCAGAGG ATGCGGCAGC CCTTGGTGCT GCCGCCATGG CGCTCGCCGA CCGGCTCTGT
CTTCCCTCTG CCGATTCTGC CCATCTCAGC CGTTCACCGC TGACGACAGC GATACGGCCT
GCATCGATCA ATTCGGTTTT GGCAGCAGCA GTTCGATAA
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| Protein sequence | MSYSGANGEQ AAALNRAIIL NAIHRGGPIS RTEIAKLSRL TKQAVTRIVD KLLDEGLVME
ARRRQGLRGQ PAIELEIDPE GAFAIGANID RDHLTIVAVD AVGNVRGRIH HEARFLLPDA
FVKLMEDAVS SFLRRKVIHE SRLAGIGLAI PDWLGEVQVI GLPDTYSQWN GFDVRAALSH
ITDHPIYIDN DANAAALGEI EYGLGTEMRS FFYILISACL GGSLVIDGMR HKGAGGLGGE
IGWLPTAVTT GPLAGETRPL GDMLSMFVLL DYLADNGVDV ATPADLLTLD ARGRALLSGW
LKKMAVNLAE AVSDIGMVVD PDGIILGGRL PVRLIDELLL YVHEEISRRG ALAPSLHRAA
ASEDAAALGA AAMALADRLC LPSADSAHLS RSPLTTAIRP ASINSVLAAA VR
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