| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7274 |
|---|
| Symbol | |
|---|
| ID | 7380500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 230317 |
|---|
| End bp | 233289 |
|---|
| Gene Length | 2973 bp |
|---|
| Protein Length | 990 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641364 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002539661 |
|---|
| Protein GI | 222102622 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAT TGCTGCCAGC ATTCCGTCGC CGATTATGTG TGTTCACGGC ACTGGCCTCC
ACCGTGTTGC CCGCGCATTG CTTCGCGCAA TCAGCATGGT CTGGAAATGC TGACAACGAA
TTTAGCAATG CATCGAACTG GTCCCCTTCG GCGCCCGGGG CAGGCGATGA TGCGCATGTC
GATACAGGCT CTCCACAAGT TACAAACGAC GTGACAGTCA ATCGTCTGGA GGTTGGTGGA
GGAAACGTCA CCATCACCGA CACAGGTGCA TTGACCGCCA CGAACGGCAC CACGATCACA
GCAGGCAGCG TTAGCGTCAA TGCGGGCGGA GTAATGAACT CCAACGTCAG CCTTGATGGC
GGTAGCCTTT CCATCGATGG CGACCTCAAT GGCCAGTTGA CGCTCAACAA CGGCAACGTC
ACCGTGAACG GTACGCTCAG TGGCGCCATG GTAGAGACAG GGACCGCGCT GTCCAACAAC
GGCACTGTTG ATGAGGTCAA TATCTCCAAA GGAGGGACCT TCGTCAATAA TAGCGGCGTA
ACCGCGGGCG CAGTTACCAA TGCCGGGACG ACATCCAACG CCGGAACGAT CGGGAGCCTG
ACCAATACCG CCGGAAATTT TACCAATAAT GCTGGCGGGA CGATTTCGGG AAAGACGACG
GTTTCGGGTG GAACTGTCAC CAACAATTTC GTCGTTACCG ACGCCGATGT CGCGGCAGCG
GCGGCCTTCA TCAACAACAC CGGTGCAACA GCCGGCGCAA TCAGAAATTC AGGCACCGTC
GTCAATGCGG GAACCATTGT CTCCCTACAG AACGATGCCG GTACATTCAC CAATGATGCC
GGCGGGGTGG TTACGGGGGA TAGCACTATT ACCGGTGGCA GCGTGACGAA CAACGCCACC
CTTCACGACG TCGATGTCGG AGCAGATGCA ACATTCACCA ATGCCAACGG CGCCACCGCC
GGTGTCGTCG TCAATGCAGG CAATTCGTCG AATGCCGGGA CTATTGATAG CCTGACCAAT
ACGGCTGGAA ATTTTACCAA CAATGCAGGC GGTACGATTA CCGGCAAATC AACAATCACA
GGCGGAACCG TCACCAATAA CTTCGTCATC ACCGATGCGG ACGTTGCCGC CGCCGCAATA
TTCGTCAACA ACTCGGGAGC CACCGCTGGC ACGATAAGAA ACTCCGGCAC GGTTACCAAT
GCGGGGACCG TCGCGGCGCT TCAAAATGAT GCCGGCACTT TCACGAACAA TTCTGGCGGT
ACCGTTACGG GTACAACAAC GATCAACGGA GGTCGTGTTG TCAACAATGC CACATTGGCA
GACGTCGATA ATGAGGCGGC GGGCGAATTC ATCAACAACA ACGGCGCTGT GGCAGGCACG
GTTACCAATT CTGGCAGTGC CTCGAACGAC GGAACAATCG CCGCGCTCGT CAACACTGAC
GGCATCTTTT CCAATACCGG TACAATTGAT GGAACAGCCA CGATTTCGGG CGGTTCACTG
ATCAACGATG GAACCGTCGC CGGAGCAGTC GTCATCGATG AGGGCGGGCT TCTTTCAGGC
AACGGGACCA TTGGCGAGCT TTTCGTCAAC GCAGGCGGTG TACTTTCACC CGGGCGAGAC
ATAGGAACAC TCACCGTCGA CGGGGATGTG ACCTTTAGCA CTGGCTCAAT CTACCAGGTC
GACATCGATG CCAACGGCGC CTCCGACCGG GTGGATGCGA CAGGCACGGT CTCCATACAG
GGGGGAACGC TTGAAATTAG AGCGGTGGGT GGCAATTACG GGCTGACAAC CACTTATACC
ATCCTGAGCG CAAGCCGCAT CACGGGCACC TTCGACAGCG TTTCAAGCGA TTTTGCTTTC
CTGACGCCAA CGTTGACCTA TGGTGCTGCG ACGATAGACA TGCGTTTCGA CCGCAATAAC
GTGCAATTCT CAGATGTCGC GGATACGGCA AACGGTCGCG CAACCGCGGT TGCCGTTGAA
GCATTGGGAA CAGGAAACTC GATTTACGAT GCGGTCTTGT CACTGAATTC TTCCACCGCA
AACAGTGCCT TCTCGCAGTT GAGCGGTGAG GTTCATGCCT CGCTCAAAAG CGCTCTGCTG
TGGGAGAGCC GTTTTGCACG CGACGCGGTG CTTGACCAAA TGGCCATGGA TCTTGATCAG
CGGAAGGATG ACGTAACGGT CTGGACCAAC AGTTTTCTGT CGTCCAACCG TTGGTCAGGG
AATGGAAATG CAGCCGGAAT CGATACCCGC ACCGCAGGCG TAGTCATGGG AGTGGATGCG
TCAGTCTCCG ACCCGTGGCG TCTAGGCGGC CTGTTGGGTT ACAGCCATGA CTCGTTGGAG
CAGGTGAAGA CAGAGTCTTA TCACGCCGGT CTCTATGCTA CGGGTGATAT TGGTCCCTTG
AACGTCATTG GCGGCGCCAT CTTTTCCCAT AACGATGCGT CAACGCTGCG CGATATCTCC
TTTGGAACGA TTACCAGCCA GCTCACCGCT GACTATGCCA GTGCCACCAG CCAGGTTTTC
GCAGATCTCT CTTCGACGCA TGAACTGGAT GCGATCAAGC TCCAGCCCTT CGCCAACCTC
GCTTACGTCA ATCTCAAGAC TGACGCCTTC CGCGAAAATG GCGGCGATGC GAGCATGTTG
GCAGCAAAAA GCAGTGACGA GATCGCAACC TCCACGATCG GTCTGCGCTG GTCTTGGAGG
TGGCCGGAAG ACAATTTACC CGTTGCCGTC TCCGGCATGC TGGGCTGGCG GCATATCGAG
GGTGACGTGT CGCCGTATTC TAGCGTCGCG TTTTCTGGCG GCACGCCATT TGTCGTCGAA
GGCGTGGAAA TGCCAAAGGA TGCTCTGCTC GCAAAATTCG GGGTTTCCGC CAGGCTTTCG
AAGTCGGCTC GCCTGACGTT CAGCTATTCC GGCGAGTTTG GCAAAGGCCT GCGGTCCAGC
GCAGCGCAGG TCAATCTGGC GGGGAGTTTT TAA
|
|---|
| Protein sequence | MKPLLPAFRR RLCVFTALAS TVLPAHCFAQ SAWSGNADNE FSNASNWSPS APGAGDDAHV
DTGSPQVTND VTVNRLEVGG GNVTITDTGA LTATNGTTIT AGSVSVNAGG VMNSNVSLDG
GSLSIDGDLN GQLTLNNGNV TVNGTLSGAM VETGTALSNN GTVDEVNISK GGTFVNNSGV
TAGAVTNAGT TSNAGTIGSL TNTAGNFTNN AGGTISGKTT VSGGTVTNNF VVTDADVAAA
AAFINNTGAT AGAIRNSGTV VNAGTIVSLQ NDAGTFTNDA GGVVTGDSTI TGGSVTNNAT
LHDVDVGADA TFTNANGATA GVVVNAGNSS NAGTIDSLTN TAGNFTNNAG GTITGKSTIT
GGTVTNNFVI TDADVAAAAI FVNNSGATAG TIRNSGTVTN AGTVAALQND AGTFTNNSGG
TVTGTTTING GRVVNNATLA DVDNEAAGEF INNNGAVAGT VTNSGSASND GTIAALVNTD
GIFSNTGTID GTATISGGSL INDGTVAGAV VIDEGGLLSG NGTIGELFVN AGGVLSPGRD
IGTLTVDGDV TFSTGSIYQV DIDANGASDR VDATGTVSIQ GGTLEIRAVG GNYGLTTTYT
ILSASRITGT FDSVSSDFAF LTPTLTYGAA TIDMRFDRNN VQFSDVADTA NGRATAVAVE
ALGTGNSIYD AVLSLNSSTA NSAFSQLSGE VHASLKSALL WESRFARDAV LDQMAMDLDQ
RKDDVTVWTN SFLSSNRWSG NGNAAGIDTR TAGVVMGVDA SVSDPWRLGG LLGYSHDSLE
QVKTESYHAG LYATGDIGPL NVIGGAIFSH NDASTLRDIS FGTITSQLTA DYASATSQVF
ADLSSTHELD AIKLQPFANL AYVNLKTDAF RENGGDASML AAKSSDEIAT STIGLRWSWR
WPEDNLPVAV SGMLGWRHIE GDVSPYSSVA FSGGTPFVVE GVEMPKDALL AKFGVSARLS
KSARLTFSYS GEFGKGLRSS AAQVNLAGSF
|
|---|
| |