| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7239 |
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| Symbol | nocT |
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| ID | 7380389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 201032 |
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| End bp | 201883 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641336 |
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| Product | ABC transporter substrate binding protein (nopaline) |
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| Protein accession | YP_002539633 |
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| Protein GI | 222102594 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.79326 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTTC GTCGCATGGC CGCGTTGGCG GTCGCCTTCA CGACACTGAT ATCGGGCTCA
GTCACCATGG CGCAAGACGC GCCGACCGAG ATCAAGATTG CAACCGAAGG AGCCTATGCT
CCCTGGAACT TTACGACGTC CGACGGCAAG CTCGATGGCC TTGAAATCGA ACTCGCCAAT
GACCTCTGCG CACGCATGAA GGTCAAATGC ACCATCGTTG CTCAGGATTG GGACGGTCTT
ATTCCGTCGC TGACGGTTGG CAAGTTCGAT GTCATTATGG CGAGCATGTT CATCACGCCA
AAGCGTCTTG AGACGATCGA TTTTACCCAG CCTTATGCGG TGGATCCTTC GGGTTTTGCT
GTTCCCAAGG ATAGCGCGGT TGGCAAGCTC GGCATCTCGA CAGAAAAATT CAAACTTGAG
GATGAGGCCC CCTCGAAAGC GGCGATCGAC AAGTTGAAAT CCCTCCTGAA GGGCAAAGTT
GTTGGCGTTC AGGCCGCAAC GACAAATCTC GATTTTCTGC GTAAGTATTT TGCCGATACC
GTAGAAATCC GCGAGTACAA AACCACAGAG CAGCATGACC TCGACTTGGC AGCTGGTCGC
ATTGATGCGA TCTTCGCCCA GCAGACGGCA CTGGCCGCGA CACTCGCAAA GCCAGAATTC
GCAGACTATA CCATTGCAGG CCCCGGCTTC GTGGGCGGCG TCTTCGGCCT TGGAACCGGT
GCGGGATTGC GCAAGCAGGA CACCAAGCTC AAGGAGATGC TGAACACCGC AATCTCCTCG
GCTATTGCCG ACGGGACCAT CAAACGTCTC TCCGAAAAAT GGGTGAAAAC CGACGTGACA
CCGGTCAAGT AA
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| Protein sequence | MTFRRMAALA VAFTTLISGS VTMAQDAPTE IKIATEGAYA PWNFTTSDGK LDGLEIELAN
DLCARMKVKC TIVAQDWDGL IPSLTVGKFD VIMASMFITP KRLETIDFTQ PYAVDPSGFA
VPKDSAVGKL GISTEKFKLE DEAPSKAAID KLKSLLKGKV VGVQAATTNL DFLRKYFADT
VEIREYKTTE QHDLDLAAGR IDAIFAQQTA LAATLAKPEF ADYTIAGPGF VGGVFGLGTG
AGLRKQDTKL KEMLNTAISS AIADGTIKRL SEKWVKTDVT PVK
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