Gene Avi_7238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_7238 
Symbol 
ID7380388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011981 
Strand+ 
Start bp200266 
End bp200940 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content58% 
IMG OID643641335 
Producttranscriptional regulator GntR family 
Protein accessionYP_002539632 
Protein GI222102593 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.178912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGTCG TTCAATCCTC CATCGCAATG CAGGCCTCAA CAGCTGAGGA AGAGGCCTAT 
CTGCATATGC AACAGGCATT GCGCCGTGGT CGCTATAAGC CGGGTGACCG CCTGATCGCC 
GAGGAGATTG CTGCGGAAAT CGGTATGAGC CGCATGCCGG TGCGGGAGGC ATTTCGGCGA 
CTTGCCTCCG ATGGGCTGGT GACACTTCGC CCCAATCGCG GCTGTGTGGT GGCGGGTCTG 
ACACTCGCTG AACTTCAAGA GGCATTCGAA ATTCGCTCTG TTTTGGAAGG TCTTGCCGTG 
CGCATCGCAA TGCCGCGCAT GAATGCCGAG ACCTTCGAAG AGCTTGAGCG CTTGTTGACC 
CTGATGGAGC GCGCAGGCGG AAGCGGAAGC AGCGACTGGG TTTTGCGGCA TCAGGAGTTC 
CACGCTTTTA TCTATGGGCT AAGTGGCCGC CCGAAGCTCA TCCGGCAGAT CACGGCGCTG 
CATGTGGTGA TAGAACCCTA TATGCGGATC TGGTTCGACT ATGTTGATAA GCCACTATCG 
GCCCGTCAGG AGCACGATAC GCTGATTGAG GCCCTGAGAT CCGGTGATGC CCGCCGAGCA 
GAGGCCGTAA TGCAGGAACA TATTGTCGAA ACAGCATCAT TGCTGGCCGA CTACGCAAGT 
CCCGCTCGGC GCTGA
 
Protein sequence
MPVVQSSIAM QASTAEEEAY LHMQQALRRG RYKPGDRLIA EEIAAEIGMS RMPVREAFRR 
LASDGLVTLR PNRGCVVAGL TLAELQEAFE IRSVLEGLAV RIAMPRMNAE TFEELERLLT 
LMERAGGSGS SDWVLRHQEF HAFIYGLSGR PKLIRQITAL HVVIEPYMRI WFDYVDKPLS 
ARQEHDTLIE ALRSGDARRA EAVMQEHIVE TASLLADYAS PARR