| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7202 |
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| Symbol | dppC |
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| ID | 7380362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 169766 |
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| End bp | 170638 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643641310 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002539607 |
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| Protein GI | 222102568 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.109242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCTTT CCTCCACACT GCTTGATCGC AACCTTGGCC GCACGAGTGA TATTTTGCGC
GGCATTCTCG CCCGTCCGGG CTTGCTGATT GCAGCTCTGT TCGTGGTTCT CGTTGCTCTT
TCCACCCTGT GGCCCGCGCT GCTCACATCG GCTGATCCTA TCACTGCCGA TCCCTTGCAA
GCACAATTGC CACCCTCAGC AGACCATTGG TTTGGCACCG ATCATCTGGG GCGGGATGTG
TTTTCCCGTG TGGTCTATGG CACGCGCTAT TCCATTTTGA TTGGCGTCAG CGCCATTACC
ATTGCTGCCG TGTTCGGCTC TCTGCTCGGC TTGCTGGCCG GGCTGTCACG CGGGCTTGTG
GATGAGTTCA TCACCCGTTT TCTCGATGTG GTTTCGTCCT TTCCCGATCT GCTGCTGGCG
TTGGTGCTGA TCTCCTTTAC CGGCCCCGGC ACGCTCAATC TTATTTTTGC GCTGGGCGTT
GCCTCCATTC CCCGCTTTGC CCGGGTGGTG CGCGCCCAAA CCTTTGTGAT TGCCCAAAGT
GGCTATGTGG AACAGGCCAA GACCTTTGGG CTGACCCGCC CTGTTCTGGT GTTTCGCCAT
GTGCTGCCCC ATGCCATCGC GCAGGTGCCA ATTCTGGCCA CCATCGGCCT TGGCACTGCC
ATCATCAATG CGGCGGGCCT GAGTTTTCTC GGCATGGGTC CGCAGCCGCC AGCACCCGAA
TGGGGGGCGA TGCTGGCCGA TGCGCGCAAT TATTTGCGCG TGGCGTGGTG GATTGGCGTG
TGGCCGGGAC TGGCCATTAC CGCCACCGTG ATTGCCATCA GCGTGCTGGG ACGCCGCTGG
CAGGCAGCAT TTGAAGGCAG GAGACAGGCA TGA
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| Protein sequence | MSLSSTLLDR NLGRTSDILR GILARPGLLI AALFVVLVAL STLWPALLTS ADPITADPLQ
AQLPPSADHW FGTDHLGRDV FSRVVYGTRY SILIGVSAIT IAAVFGSLLG LLAGLSRGLV
DEFITRFLDV VSSFPDLLLA LVLISFTGPG TLNLIFALGV ASIPRFARVV RAQTFVIAQS
GYVEQAKTFG LTRPVLVFRH VLPHAIAQVP ILATIGLGTA IINAAGLSFL GMGPQPPAPE
WGAMLADARN YLRVAWWIGV WPGLAITATV IAISVLGRRW QAAFEGRRQA
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