| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7172 |
|---|
| Symbol | |
|---|
| ID | 7380337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 138936 |
|---|
| End bp | 140579 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641285 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
|---|
| Protein accession | YP_002539582 |
|---|
| Protein GI | 222102543 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.892646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGA CCCCTTCTGT TCTCGATATC AGAGAACTGA ATATTTCCTA TGGAGATGGA
GAGAGCCGCA CCCGCGTGGT GCATGATGTG TCGCTCGAAG TCGGTGCTGG CGAGGTTGTG
GCACTGGTGG GCGAAAGCGG TTCTGGCAAA ACCTCCACGG CACAGGCCAT CATTGGCCTC
CTCTCTGGCA ATGGGCAGAT TGATAGCGGC TCTATTCGCC TGAATGGCGA GGAGATTTCC
CGCTGGAGTG AAAAGAGCTT GCGCGGCATT CGCGGCCCCG TTCTCAGCCT GATCCCGCAA
GACCCGTCGA ATTCGCTCAA TCCGGTACTC ACGGTTGGCG CGCAGGTGCG CGAAATTCTG
GAAATCCACG GCAAGCTTTC CCGCCGGGAT GCAGATCGGC GGGTGGTGGA GCTGTTGACA
CAGGTGGGCC TCTCGCAGCC AGCGCTTCGC GCCAGACAAT ATCCACACGA ACTCTCTGGC
GGCATGAAAC AGCGGGTGCT GATTGCCATC GCCATTGCGC TGAAACCAGC ACTGATCATT
GCCGATGAGC CAACCTCGGC GTTGGATGTG ACCGTGCAGC GTCGCATCCT GGATTTGATT
GACGATCTGC GCAAAGCTTA CGGCACCGCC GTGCTGCTGG TGACCCATGA TCTGGGTGTT
GCCGCCGACC GCTCGGATCG GTTGGTGGTC CTTCAGTCCG GCCGTATTCA GGAGCAAGGC
AAAACCGCAG AGGTGCTGGT CGCGCCCAAA AGCGCCTATA CGGCAAGGCT TTTATCCGAT
GCGCCCTCGT TGGCGGCCCC GGTTGTGCGG CCTGCCATTG CGGCGGATCG GCCCATCAGT
GTTACCGTCG ATAATCTCGT GCAGGAGTTT AAACTGCCAA CGGGTGAGCG TTTCCGCGCC
GTGGATGGTC TTTCCTTCAC CGTTCCCCAA GGCACCACCC ACGCCATTGT TGGCGAATCC
GGCTCTGGCA AAACCACCAC AATCCGCAGC ATTGCCGGAT TTCAGAAAGC CACATCTGGC
AGCATCCGCG TGGGTGATTT TGACCTTGGC AGCCTGAACC ACAAAAGCCT GCGCGCGTTC
CGGCGCAAGG TGCAGCTTGT CTATCAAAAC CCGTGGAGTT CTCTGGACCC CAAGCAGACG
ATTTTCTCGA TTGTCGAAGA ACCGCTGCTG AATTTTGAAC CGCTTCCCAA GCAAGAGCGC
GCCGCCCGCG TGGAAGCCAT GATTGAGCGT GTTGGCCTGC CGCTCTCGGT TCTCAACCGT
AAACCCCATG CGCTGTCAGG CGGACAGCGC CAGCGAGTGG CCGTTGCCCG CGCTCTGGTG
CTGGAGCCTG AGGTGGTTGT GCTGGATGAG GCCGTCTCGG CGCTGGATGT GACGGTACAG
GCGCAAATCC TTGCCCTGCT TGGCAGTTTG CAGCGCGATT TTGGCCTGAC CTATATTTTC
GTCTCGCACG ATCTGGCCGT CGTGCGCCAG ATCGCCGACA CGGTCTCGGT TTTGCACAAT
GGCAAACAGG TTGATTACGG CCCGGTTGAG ACGGTCTTCA CCCACCCGCA AAGCGCCTAC
ACCCGCGAGT TGATCGAGGC CATTCCGGGC CGGGCTTTTC CGAAGAGACA TCAACATTCA
CTGACAGCAG GATCACCATC ATGA
|
|---|
| Protein sequence | MSKTPSVLDI RELNISYGDG ESRTRVVHDV SLEVGAGEVV ALVGESGSGK TSTAQAIIGL
LSGNGQIDSG SIRLNGEEIS RWSEKSLRGI RGPVLSLIPQ DPSNSLNPVL TVGAQVREIL
EIHGKLSRRD ADRRVVELLT QVGLSQPALR ARQYPHELSG GMKQRVLIAI AIALKPALII
ADEPTSALDV TVQRRILDLI DDLRKAYGTA VLLVTHDLGV AADRSDRLVV LQSGRIQEQG
KTAEVLVAPK SAYTARLLSD APSLAAPVVR PAIAADRPIS VTVDNLVQEF KLPTGERFRA
VDGLSFTVPQ GTTHAIVGES GSGKTTTIRS IAGFQKATSG SIRVGDFDLG SLNHKSLRAF
RRKVQLVYQN PWSSLDPKQT IFSIVEEPLL NFEPLPKQER AARVEAMIER VGLPLSVLNR
KPHALSGGQR QRVAVARALV LEPEVVVLDE AVSALDVTVQ AQILALLGSL QRDFGLTYIF
VSHDLAVVRQ IADTVSVLHN GKQVDYGPVE TVFTHPQSAY TRELIEAIPG RAFPKRHQHS
LTAGSPS
|
|---|
| |