| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7171 |
|---|
| Symbol | |
|---|
| ID | 7380336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 137893 |
|---|
| End bp | 138939 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643641284 |
|---|
| Product | monooxygenase |
|---|
| Protein accession | YP_002539581 |
|---|
| Protein GI | 222102542 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.21228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAA TAACACTGGC AAAGCAGGCA AAACGGCTCG GCTTTTTCAC ACGCTTGCTG
GATGATACCG ATGCAGCGGG ACGCTATCGT CTGGCGGAAG AGCAAATCCA GCACGCAGAA
GCCAATGGTT TTGACAGCGC ATGGATTGCC CAGCATCACT TTCATGCCGA AGAAGGCGGG
TTGCCATCGC CCGCCGTGTT CCTCGCCCAT GTTGCGGCCC GCACATCCAC CATTCGGCTT
GGCACCGGGG TGATCACCTT GCCAATGGAA AATCCGCTGC GGGTGGCAGA AGACACTGCC
GTGACCGATC TTTTGTCCGG TGGCCGTCTG GAAGTGGGCT TTGGCACGGG CGGCACCCGT
GAGTCCTTTG AGGCGTTTGG CATTGCTGCC GACAAGCGCG GTGAGGTTTA TGGCCAATAT
CTCGACATCG TTCGCAAAGC TTGGGCAGGC AAGGATGTGG GCGCGGGCAA TCGGCTTTAT
CCCAATGCCC CGCATCTGCT GGATCGCGTC TGGCTTGCGA CGTTTTCGCC CGTTGGCGCA
AAGCTTGCTG GGGAAAGCGG CGATGGGTTG ATGCTATCAC GCACCCAACC ACGCCCGGCA
GACAGGCCCC ATGCGCGGCT TGATGAATTG CAAAACCCGA TCATCGATGC CTATCTGAGC
GCCCTGCCCC AAGGCCGCGC ACCGCGCATT CTTGGCTCTC GCAGCCTGTT TGTGGCTGAA
GACCGCAAGC GCGCTCTGAA GCTGGCCGAA GAGGGCCTCA CCAAAGTCGC CGCCCGCTTT
GCCGCCGCAG GCCATCGCAT CGATGGCACC AGCGTGGAGG ATCTGATCAA GGCGCTGGAT
AGCCATGTGG GTACACCGGA TGATGTGATT GCCTCGCTGA AGGCCGACAC GGCCTTGGCC
CGCTCCACAG AACTGGTCTT TCAGGTTCAC TCCATCGATC CGCCCCATGC CGATATTCTG
CGCTCCATTG AGCTGATTGC CACTGAAGTT GCCCCCAAAC TGGGCTGGAG CCGCAAGACT
TCCAAAGCGC TGGCCGCCGC AGAATAA
|
|---|
| Protein sequence | MTQITLAKQA KRLGFFTRLL DDTDAAGRYR LAEEQIQHAE ANGFDSAWIA QHHFHAEEGG
LPSPAVFLAH VAARTSTIRL GTGVITLPME NPLRVAEDTA VTDLLSGGRL EVGFGTGGTR
ESFEAFGIAA DKRGEVYGQY LDIVRKAWAG KDVGAGNRLY PNAPHLLDRV WLATFSPVGA
KLAGESGDGL MLSRTQPRPA DRPHARLDEL QNPIIDAYLS ALPQGRAPRI LGSRSLFVAE
DRKRALKLAE EGLTKVAARF AAAGHRIDGT SVEDLIKALD SHVGTPDDVI ASLKADTALA
RSTELVFQVH SIDPPHADIL RSIELIATEV APKLGWSRKT SKALAAAE
|
|---|
| |