Gene Avi_7111 details

Gene Information

• Locus tag: Avi_7111
• Symbol: rhtB
• ID: 7380161
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 92703
• End bp: 93350
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643641239
• Product: RhtB family transporter
• Protein accession: YP_002539536
• Protein GI: 222102497
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGATGGATC CCGCACTCTG GCTACTTTTC GCGCTTGCCT ATCTCGGAAT CACCTTTTCG 
CCCGGTCCTA ACGTCCTGAT GGTTCTGAAC CATACGGCAA AATATGGCTA TCGCCACGTT 
TTCGTGACAA TGGCCGGCAA CCTTTCATGC CAGCTTTTGA TTATCGTCGC GATTGGTGTC 
GGCATCGGCT CGTTGCTAAC TGTAGAGAGC GCAGCCTACC ACTGGATGAA GATTGCGGGC 
GCACTTTATC TGATCTATCT CGGCGCGCGT ATCGTTTATG ATGTTTTTAT CCGGGGTCGG 
CTGAAAGCGG TAAAAGCACC GACGCAGCTG AATCAGGTGC ATGCGCTGCC CTCGGCGCGC 
AAACGCTTTC TTGAGGCTTT CGCGGTTTCG GCCAGTAATC CCAAGACGGT GATTTTTCTA 
TCGGCGTTCC TGCCCCAATT TATCTCGCCG GAATGGCCAA TCGTGCCGCA ATTCGCAATC 
ATGTATCTGA CAATCGCGAT TATCGTCATC TCCGTGCATT ATATGTACGC GTTCTTGCTC 
ATCAGAGCTC AGCGTCGCTT CTCAGGCATG TTTTCCAGCC GTTTGTTCCC CGGGCTCAGC 
GCCGCGATTT ATCTCTTTTT GGGAGTCACG TTGGGGGTTT CTGCGTGA 

 

Protein sequence

MMDPALWLLF ALAYLGITFS PGPNVLMVLN HTAKYGYRHV FVTMAGNLSC QLLIIVAIGV 
GIGSLLTVES AAYHWMKIAG ALYLIYLGAR IVYDVFIRGR LKAVKAPTQL NQVHALPSAR 
KRFLEAFAVS ASNPKTVIFL SAFLPQFISP EWPIVPQFAI MYLTIAIIVI SVHYMYAFLL 
IRAQRRFSGM FSSRLFPGLS AAIYLFLGVT LGVSA