| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7086 |
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| Symbol | ameR |
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| ID | 7380142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 76852 |
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| End bp | 77577 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643641221 |
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| Product | transcriptional regulator TetR family |
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| Protein accession | YP_002539518 |
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| Protein GI | 222102479 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.546749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCATA TCGAGGATAA CGCGGGCAGC GAGCGAAAAC CTTTGGCAGG AGCTGCAAAG
TCTGTTCCCG CCGTCGCGGC GGACAAGCCT TATCATCGCA AAAATCTGCG TGAGGATTTG
CTTAGATCAG CACTTGAACT GACTGTGGAA CGGGACGGCC CAGCCTTCAG CCTCAGGGAG
CTTGCCATGC GCGAAAAGGT AAGCCACACC GCTGTCTATC GCCACTTTTC CGATAAGGCG
TCTCTCTTCG CCGAACTGTC GAGTGAGGGT TTTCGCCAGT TGGCCCTTTA TCAAAATCGC
ACGATTGAGG CCCCTGACCT GCCTCCATTG GCGAGGCTGG AACAAATGGG GGCAACCTAT
GTGCGTTTTG CCATGGAAAA CGTTGGCTTC TTCCGCGTGA TGTTTGATGT AAATCTGGCG
GGTGAATGGG AAGAAGCCCG CAAGGGTGAA CGGACAGCCT TTGGAAACCT CGTAGGACTG
GTGCGCCAAT GCCAGTCTGA GGGAGACATC ATTGATGCTG ACCCACGCGC CATTGCGACC
TATCTTGTTC TGTCACCGCA TGGACTTGCC CATTTCAACA ATATTGGCCA TCTGACACAT
CTGTTGCAAA CAAGCATGAC GCTTGATCAA CTCGCAACAC AAGTCTTTCG GCTCACCCTC
GCGCCATTCC TCACCAAGCC CTATTCGGAG CAAGATGTAC GTGCGCTGGT CAATAGCATC
TTTTGA
|
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| Protein sequence | MKHIEDNAGS ERKPLAGAAK SVPAVAADKP YHRKNLREDL LRSALELTVE RDGPAFSLRE
LAMREKVSHT AVYRHFSDKA SLFAELSSEG FRQLALYQNR TIEAPDLPPL ARLEQMGATY
VRFAMENVGF FRVMFDVNLA GEWEEARKGE RTAFGNLVGL VRQCQSEGDI IDADPRAIAT
YLVLSPHGLA HFNNIGHLTH LLQTSMTLDQ LATQVFRLTL APFLTKPYSE QDVRALVNSI
F
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