Gene Avi_7080 details

Gene Information

• Locus tag: Avi_7080
• ID: 7380136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011981
• Strand: +
• Start bp: 71096
• End bp: 71791
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643641215
• Product: Transcriptional regulator
• Protein accession: YP_002539512
• Protein GI: 222102473
• COG category: [K] Transcription
• COG ID: [COG1414] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGGCA ATTCTTCAGG TGTCGCAGCT GTTGAACGCG CTGTTTCGAT GCTGGAAGCT 
TTTACCGATG TCGACTATTC GTTGACGCTC GGAGAGCTTG CGCGTCGCAC GGAACTCGAC 
AAATCCACGG TGTTGCGCAT CGCGCGCTCG CTTGCGAAAT CCTCCATGCT CGTTCGCAAT 
GATGATGCCA GCTGGCGGCT AGGGCCGAAG CTCGTGCGTC TCGGCGGGCT GTATCAATCC 
ACGTTCAAGT CATCTGCGAT CGTTGAGCCT TTGCTTGCCC AGATCAGCGA TGAGAGCGGC 
GAGAGCGCTG CGGTTTACGT GAAAGAAGGC GTTGTCCGCG TCTGCCTTCA TAGGCACGAT 
TCCACACAAT CGATCCGCCA CTCGGCGCGT GTTGGCGATG CGATGCCGCT CGATCGCGGG 
GCGCCCGGGC GTGTCATTCT GGCTTTCACC GGTTCCAGCG GAAAGCTCTA TGACGATATT 
CGCGCGAAGG GGTTTCATGT CACCATCGGC GAGCGCGACC CACAGGTCGC GAGCGTCGCC 
GTCCCGGTCT ACCGCGACGG ACAAGCCCTC TTTGGCTCTT TGGCTTTGAC CGGCCCGCCA 
TCGCGTTTCA ACGAAGAGGC CGTGTCGAAA AATCTCGAAA TTCTCCGCGT TGCCGCGCGC 
AAGCTCAGCG CTGCGCTTGG AGGAGACCCC GGCTAG 

 

Protein sequence

MPGNSSGVAA VERAVSMLEA FTDVDYSLTL GELARRTELD KSTVLRIARS LAKSSMLVRN 
DDASWRLGPK LVRLGGLYQS TFKSSAIVEP LLAQISDESG ESAAVYVKEG VVRVCLHRHD 
STQSIRHSAR VGDAMPLDRG APGRVILAFT GSSGKLYDDI RAKGFHVTIG ERDPQVASVA 
VPVYRDGQAL FGSLALTGPP SRFNEEAVSK NLEILRVAAR KLSAALGGDP G