| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7064 |
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| Symbol | traA |
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| ID | 7380124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 56074 |
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| End bp | 59376 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643641203 |
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| Product | Dtr system oriT relaxase |
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| Protein accession | YP_002539500 |
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| Protein GI | 222102461 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.590726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCATCG CCCATTTCTC AGCCAGCATC ATCAGCCGCG GCGACGGCCG CAGTGCCGTG
CTGTCTGCGG CCTACCGGCA TTGCGCGAAA ATGGAATATG AGCGAGAGGC GCGCACGATC
GATTACACAC GCAAACAGGG CCTGCTGCAT CAGGAATTTG TTCTGCCAGC CGATGCCCCG
AATTGGGTCC GCTCCCTTAT CGCCGATCGC TCTGTATCGG GAGCGGTCGA AGCCTTCTGG
AACAAGGTCG AGGCCTTCGA GAAGCGCTCC GATGCCCAGC TCGCGCGAGA CCTGACAATC
GCACTTCCGC TGGAGCTGAC GGCCGAGCAG AACATCGCAC TGGTACGGGA CTTCGTGGAA
AAGCACATTC TCGCCAAGGG CATGGTTGCC GACTGGGTCT ATCATGACAA TCCTGGAAAT
CCGCACATCC ACCTGATGAC GACATTGCGG CCGCTCTCCG AAGATGGGTT TGGGGCAAAG
AAGGTTGCAG TCATTGGTGA GGATGGCCAG CCTGTCCGCA CGAAATCTGG TAAGATCGTC
TACGAACTCT GGGCCGGTTC GACCGAAGAT TTCAACAAGC TGCGCGATGG ATGGTTCGAA
CGCCAGAACC ATCACCTGGC GCTCAGTGGT ATCGATCTCC GTGTCGATGG CCGCTCCTAC
GAGAAGCAGG GCATAGACCT GGAGCCGACC ATCCATCTCG GCGTCGGCGC CAAGGCGATC
GAGCGCAAGG CGGAAAGCCA AGGCGTGCGT CCGGGGCTCG AGCGGATTGA GCTGAATGAG
AAGCGGCGAA GCGAGAACAC CCGTCGAATT CTGCGACGCC CGGAGATCGT GCTCGACCTG
ATCACCCACG AGAAAAGCGT CTTTGACGAG GGTGATATCT CCAAGGTGCT GCATCGTTAC
ATCGATGATC CCGGCATGTT TCAGCAGTTG ATGGCGCGCA TCATCCAGAG CCCTGATGTT
CTGCGCTTGC AGCGCGACAC GATCGATTTT GCAACCGGCG ACAAGGTGCC GGCCCGTTAC
TCAACACGGG CGATGATCCG GCTGGAAGCG AGAATGGCGA CGCAGGCGAT ATGGCTGTCA
AACCGGGAGG GACGTGCGGT TTCCCCAACC ATACTGGATG AGACATTCCG GCGGCATGTG
CGACTGTCGG ATGAGCAACG GATTGCAATC GAACGTATCG CTGGCCCGGC TCGCATCGCG
GCTGTCGTAG GCCGTGCGGG CGCGGGCAAG ACCACGATGA TGAAGGCGGC GCGTGAGGCA
TGGGAACTGG CCGGCTATCG CGTTGTCGGC GGCGCGCTTG CGGGCAAAGC GGCCGAAGGC
TTGGAGAAGG AAGCTGGCAT TCAGAGCCGC ACGCTCGCGT CCTGGGAATT GCGCTGGGGC
CGTGGCCGCG ACATGCTCGA TGACAGGACC ATCTTCGTCA TGGACGAGGC CGGAATGGTC
GCCTCCAAAC AGATGGCGGG CTTTGTCGAT GCCGTGGTCA AGGCAGGGGC AAAGATCGCG
CTGGTCGGTG ATCCCGAGCA GCTTCAGCCG ATCGAGGCGG GGGCTGCCTT CCGTGCCATT
GTTGATCGCA TCGGATATGC CGAACTGGAT TCGATCTATC GCCAGCGCGA GGACTGGATG
CGCAAAGCCT CGCTTGATCT GGCGCGGGGC CGCGTCGGAG ATGCGCTCGC CGCCTATCGC
TCTGAGGGCA GGGTGCTTGG TTCCGAGCTG AAGGCTCAGG CTGTCGAACA CCTCATCGCG
GACTGGTACC GTGATTATGA CCCTGCGAAG TCCACATTAA TCCTCGCTCA CCTGCGCCGT
GACGTGGGCA TGTTAAACGG CATGGCGCGT GACAAGCTGG TCGAAAGCGG CATCATCGGC
GAAGGCCATG CCTTTAGAAC TGCCGACGGC ATCCGCCAAT TTGACGTAGG TGATCAGATC
GTCTTTCTGA AGAACGAAGG ATCGCTCGGC GTCAAGAATG GCATGATCGG TCATGTCATC
GAAGCGGCGC CGAACCGGAT CGTCGCTGTC GTGGGGGAAG GCGATCAGCG CCGCCAGGTG
ACGGTCGAAC AGCGCTTCTA CAGCAATCTC GATCATGGCT ACGCGACAAC GATCCACAAA
AGCCAGGGAG CGACCGTCGA CCGGGTGAAG GTGCTGGCTT CGCTGTCGCT CGATCGGCAT
CTGACCTATG TGGCGATGAC CCGCCACCGC GAGGATCTGC AGCTTTATTA CGGGAAGCGG
TCCTTTGCCT TCAATGGCGG TCTATCGAAA GTCCTTTCCC GCAGAAACGC CAAGGAAACC
ACGCTCGATT ACGAGCGCGG AAACCTCTAC CGCGAGGCAC TGCGGTATGC AGAAAACCGT
GGTCTCAACA TCGTCCAGGT GGCGCGTACG CTGCTGCGCG ACCAACTCGA CTGGACACTG
CGCCAAAAAA ACAGACTTGC CGATCTTGCT CAGAGGCTTC GTGCAATCGG TGAGCGCTTT
GGCCTCCAAC AATCCCTGAA AACCCAAGCG ATGAAGGAGA CAGCACCTAT GATCGCAGGC
ATCAAGACAT TTTCCGGTTC CGTCGCCGAT ACGGTGGAGC AAAAGCTCGA CACTGATCCA
GCCCTCAAAA AACAATGGGA AGAGGTCTCG ACCCGCTTTG TTTACGTCTA TGCCGATCCC
GAGACTGCCT TCCGGGCGAT GAACTTCGAT GCAGTGCTGG CAGATAAAGA TAGCGCCCGC
CAAGTGCTTC AAACGCTTGA AGCGGAGCCG GCATTCATCG GACCATTGAA GGGTAAGACC
GGTATTCTCG CCAGTAAGGC CGACCGCGAG GACCGTCGCG TCGCAGAACT GAACGTCCCC
GTGCTGAAGC GCGATCTTGA GCATTATCTG AGGATGCGCG AGACTGCCGT GCAGCGGCTG
CGGGCTGACG AGCAGGTATT GCGCCAGCGC ATATCGATCG ACATTCCAGC GTTGTCGCCG
ACGGCACATG TGGTGCTGGA GCGCGTGCGC GATGCGATTG ACCGTAACGA CCTGCCAGCG
GCCATGGCGT ATGCGCTCAG CAATCGTGAA ACCAAGACTG AGATCGACGG GTTCAACCAG
GCCCTCGCCC AGCGGTTTGG GGAACGCACG CTGCTCACCA ATGCCGCGCG GGAACCCTCC
GGAAAGCTGT TCGACACACT CTCTGAAGGA ATGCAGCCGG AGCAGAAAGA ACGCCTGAAG
GAAGCTTGGC CGGTCATGCG CACAGCCCAA CGGCTTGCTG CCCACGAACG CACCGTGCAG
TCATTGAAGC AGTCGGGGGA ATTGCGTCTC ACCCAGAGCC AGACCTCGGT GCTCAAGCAA
TAA
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| Protein sequence | MAIAHFSASI ISRGDGRSAV LSAAYRHCAK MEYEREARTI DYTRKQGLLH QEFVLPADAP
NWVRSLIADR SVSGAVEAFW NKVEAFEKRS DAQLARDLTI ALPLELTAEQ NIALVRDFVE
KHILAKGMVA DWVYHDNPGN PHIHLMTTLR PLSEDGFGAK KVAVIGEDGQ PVRTKSGKIV
YELWAGSTED FNKLRDGWFE RQNHHLALSG IDLRVDGRSY EKQGIDLEPT IHLGVGAKAI
ERKAESQGVR PGLERIELNE KRRSENTRRI LRRPEIVLDL ITHEKSVFDE GDISKVLHRY
IDDPGMFQQL MARIIQSPDV LRLQRDTIDF ATGDKVPARY STRAMIRLEA RMATQAIWLS
NREGRAVSPT ILDETFRRHV RLSDEQRIAI ERIAGPARIA AVVGRAGAGK TTMMKAAREA
WELAGYRVVG GALAGKAAEG LEKEAGIQSR TLASWELRWG RGRDMLDDRT IFVMDEAGMV
ASKQMAGFVD AVVKAGAKIA LVGDPEQLQP IEAGAAFRAI VDRIGYAELD SIYRQREDWM
RKASLDLARG RVGDALAAYR SEGRVLGSEL KAQAVEHLIA DWYRDYDPAK STLILAHLRR
DVGMLNGMAR DKLVESGIIG EGHAFRTADG IRQFDVGDQI VFLKNEGSLG VKNGMIGHVI
EAAPNRIVAV VGEGDQRRQV TVEQRFYSNL DHGYATTIHK SQGATVDRVK VLASLSLDRH
LTYVAMTRHR EDLQLYYGKR SFAFNGGLSK VLSRRNAKET TLDYERGNLY REALRYAENR
GLNIVQVART LLRDQLDWTL RQKNRLADLA QRLRAIGERF GLQQSLKTQA MKETAPMIAG
IKTFSGSVAD TVEQKLDTDP ALKKQWEEVS TRFVYVYADP ETAFRAMNFD AVLADKDSAR
QVLQTLEAEP AFIGPLKGKT GILASKADRE DRRVAELNVP VLKRDLEHYL RMRETAVQRL
RADEQVLRQR ISIDIPALSP TAHVVLERVR DAIDRNDLPA AMAYALSNRE TKTEIDGFNQ
ALAQRFGERT LLTNAAREPS GKLFDTLSEG MQPEQKERLK EAWPVMRTAQ RLAAHERTVQ
SLKQSGELRL TQSQTSVLKQ
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