Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7054 |
Symbol | |
ID | 7380116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | - |
Start bp | 47162 |
End bp | 48556 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643641195 |
Product | hypothetical protein |
Protein accession | YP_002539492 |
Protein GI | 222102453 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00922196 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTATC CATCGCAAGA GGCAAGCCGC GAGACGCGAT TGGGTCTGAT CATCTCGAAA TATCCTGATG TTTGCCGCTC GCCGCATGCC TGCGTGCCAT ACAATATTAT AGCCTACCAA TCCGACGCAG CCGGCACGGC CGCGACAGTG CATATGACTG GGCAGCGCGC CCACAAGCAA AATTCGGTTG TCACGAAATG CTTCGGCGAC GAGCCGGGCG TGGGTCTTGG CGTCAAATCG AATACTGTTG GCTCTGTGTG CCATCGCAAA ACTCATTCGC GCAATGTCCG TATCGAAGGC CAATGGGCCA CCCGCGACAC CGACGAATGG TATATGAACA ACAAGAATAC CGTCGGTAAA CTGGTTTGGT ACACGGGGTC GAAGGATTTT AAGCCAACGC CTCCTTTAGA ACAACCGTCC GCTAGCCGGA GCCAGGAAGG TCTGGTCATG AGCGATGCGA CGCCCATGAC CTTCGAACCT GGCAAGGAAT ACGCTTTCAA CGATACGACC GGACAATTTA CAAAACCCGC CCAAACCCAG CCGACCGATA CGAAGCAGAC AGCGTCGGAT GGATCGCGAT GGTGGACCAT CATCAACGGG CTCAAAAACA TCCGATCGAT CAATCCGAGC GGTGCAGGCG CTATGGAGCT GATGGGGGCG GCTGACTATT ATCTGAAGCA GAACGTTAAT GAGCCGACGG ACTGGTTGAG TCATGGCTTT CTAAAGACGC AACCAACTCA CACGAATACT CCTATCGATA ATGGTGTCCC AACCAACACG GCCCCAACCG AACCTGAAAA GAAGCAGGAA CTTGAGGAAA AGCAAACGAC GGCGCCGGCC AATGGGCGGA CGGACGGAAA CACCAAGATC ACGGGGCAAC AGAAGCGCAA AAGGGAGTGC CGGTGCGTCA CGGGCGCCTA TGATGATATC AAGAATGTCT GCGGTGTCGA ATGTGGTTCT GATTATCAGG CGCACCATAT CGTGCCGGAT TACACACTGC GTTACGGTAA TCGTGCAGAG GCCGAGAAAG GGCAGAAACG AATTCCTGGA TTGCCAACGT TCGGACAGGG ACCAGCGATC TGCTTAAAAG GTTATTCTGC CGATGCAGGC AGTGAGCATG GGTTGGCACA TCTAGCGGAT GTACAAGTTA ATGCTTTGGG CTCCGGTTGG AGTACGCCGC AGGGAACAGC AGATATTTCG AGCATTACTG AAATTTCACG AAATGCTGCC GTCGCCGCGA CTGGAGGGGA ATGTGAAGAC GAAATCAATA CGGCACTAGA TGCCCAGCCT TCTCTAGATT CCAATATTCT AGGAAGAACG ACCATTATGC CACCTGCTGA AGGAACGGAC CCTTATAATC TGCTGTCGAC CGGTGCTCAC GCGACAGTTC ACTGA
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Protein sequence | MSYPSQEASR ETRLGLIISK YPDVCRSPHA CVPYNIIAYQ SDAAGTAATV HMTGQRAHKQ NSVVTKCFGD EPGVGLGVKS NTVGSVCHRK THSRNVRIEG QWATRDTDEW YMNNKNTVGK LVWYTGSKDF KPTPPLEQPS ASRSQEGLVM SDATPMTFEP GKEYAFNDTT GQFTKPAQTQ PTDTKQTASD GSRWWTIING LKNIRSINPS GAGAMELMGA ADYYLKQNVN EPTDWLSHGF LKTQPTHTNT PIDNGVPTNT APTEPEKKQE LEEKQTTAPA NGRTDGNTKI TGQQKRKREC RCVTGAYDDI KNVCGVECGS DYQAHHIVPD YTLRYGNRAE AEKGQKRIPG LPTFGQGPAI CLKGYSADAG SEHGLAHLAD VQVNALGSGW STPQGTADIS SITEISRNAA VAATGGECED EINTALDAQP SLDSNILGRT TIMPPAEGTD PYNLLSTGAH ATVH
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