Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_7045 |
Symbol | |
ID | 7380240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011981 |
Strand | + |
Start bp | 41440 |
End bp | 43098 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643641188 |
Product | transposase |
Protein accession | YP_002539485 |
Protein GI | 222102446 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3436] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.444357 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTGA AACCTGACGC TCTTCCCGAA GACCTTGCCA GCGCCTATTT GGCGCTACTG GCCAATCACG ATGTCGTCGT CAACGAGCGG AACATTGCAG TCGCGGAGGC TGCCAATGCG CAAGCCATGC TATCTGATCG CGATGCGCGG ATCGCCAGTC TTGAATTGCG GATCGACAAG CTCAAGCGCG AACTACACGG CCAGAGCAGT GAACGCTCAG CGCGGCTGAT TGATCAGTTG GAATTGCAGC TCGAAGAGCT GGTGACGGCA GCGAGCGAAG ATGAAGTTGC AGCGCAGGCA GCGGCGGCCA AAACGGCAAA CGTGCGTCCG TTTGTGCGCA AGCGTCCAGT TCGCAAGCCT TGGCCGGACG ATGTCGAGCG CGAGCGCGTG GTCATTGCCC CTCCGAGCAC CTGCGCGTGT TGCGGCGGGT CGCGCCTGTC GAAACTGGGT GAGGACGTTA CCGAGACGCT GGAAGAAATT CCGCGCCGCT TCAAGGTCAT CGAGACGGTG CGCGAGAAGT TCACCTGCCG TGACTGTGAG GCCATCAGCC AGTCGCCAGC CCCTTTCCAT GCCACCCCGC GTGGCTTCAT AGGACCCCAA CTGCTGGCGA CGATCCTGTT CGACAAGTTC GGCATGCATA GCCCGCTCAA TCGGCAGAGT ACCCGGTTCA AATGCGAGGG GATCGATCTG TCGACCTCAA CGCTTGGCGA TCAGGTCGGG CTTGGAACAT CGGCTCTCAT GCCACTGTTC GATCTCATCG AGGCCCAGGT CTTTGCGGCT GAGCGCCTCC ACGGTGACGA CACCACCATT CCCATCTGGG GCAAAAGCAA ATGCACAACT GGGCGCATTT GGACCTATGT GCGTGATGAT CTGCCCTTCA AGGGGGATGC ACCCCCGGCT GCGGTTTATT ACGCCTCGAG CAACCGCCGA GGCGAGCATC CGCAAAGACA TCTGGCCAGA TATGGCGGCA TTCTGCAGAC GGATTGTTAC AACGGGTTCG AGCCGATATC GATTGCCGCA CAGAAAGACG TGCCGATCAC GTTTGCTTTT TGCCATGCGC ATGCACGACG AAAATTCTTT GAGTTGGCCG ATCTCGAAAA AAGTGCGCGC GACAGCAAGC GCAATGGCAG GCCGATCTCC CCGATCGCGC TTGAGGCCGT CAAACGCTTC GACGCGCTGT TTGACATCGA GCGGCAGATC AATGGGCTGA GCGCTGAAGA GCGATTGGCG GTGCGACAGC ACAAAAGCAG GCCGCTGTTC GACGACATGC ATGCGTGGCT GCAACGCGAG CGCGCCACGC TCAGCAGATC ATCCGACCTC GTCAAAGCCA TGGACTATAT GCTCAAGCGC TGGGACGGCT TTGCGCTATT CCTGGAAGAC GGCCGAATTT GCCTCACAAA TAATGCCGCC GAGCGCGCTT TAAGAGGTAT TGCATTGGGA CGCCGCAACT GGACCTTCGC CGGGTCCCAG CGTGGGGCCG AGCGCACTGC CGTCATGCTC ACACTCATCA CAACCTGCCG TCTTAATGAT GTCGACCCAA AGGCATGGCT TGCCGATGTG TTCACCCGCA TCGCCGATCT CCCCGTCACC CGCCTGCACG AACTGCTGCC TTGGCAATGG AAGTTGCGCA AAGGGATAGC TATAGCGCCG GTCGGGTGA
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Protein sequence | MALKPDALPE DLASAYLALL ANHDVVVNER NIAVAEAANA QAMLSDRDAR IASLELRIDK LKRELHGQSS ERSARLIDQL ELQLEELVTA ASEDEVAAQA AAAKTANVRP FVRKRPVRKP WPDDVERERV VIAPPSTCAC CGGSRLSKLG EDVTETLEEI PRRFKVIETV REKFTCRDCE AISQSPAPFH ATPRGFIGPQ LLATILFDKF GMHSPLNRQS TRFKCEGIDL STSTLGDQVG LGTSALMPLF DLIEAQVFAA ERLHGDDTTI PIWGKSKCTT GRIWTYVRDD LPFKGDAPPA AVYYASSNRR GEHPQRHLAR YGGILQTDCY NGFEPISIAA QKDVPITFAF CHAHARRKFF ELADLEKSAR DSKRNGRPIS PIALEAVKRF DALFDIERQI NGLSAEERLA VRQHKSRPLF DDMHAWLQRE RATLSRSSDL VKAMDYMLKR WDGFALFLED GRICLTNNAA ERALRGIALG RRNWTFAGSQ RGAERTAVML TLITTCRLND VDPKAWLADV FTRIADLPVT RLHELLPWQW KLRKGIAIAP VG
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