| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7029 |
|---|
| Symbol | |
|---|
| ID | 7380226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | - |
|---|
| Start bp | 27595 |
|---|
| End bp | 28518 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643641174 |
|---|
| Product | ABC transporter membrane spanning protein (oligopeptide) |
|---|
| Protein accession | YP_002539471 |
|---|
| Protein GI | 222102432 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTTT ACGTGTTAAG GCGTCTGGCG GTTGCCATAC CGACGCTGCT GATCCTGATT
ATTACGTCCT TCCTGCTGAT GAAAGCGGCG CCCGGTGGGC CATTCACAAC AGAGAAGGCG
CTAGCGCCGG AAATTCTGGC CAATCTCAAT GCCAAGTACG GGCTTGATGC GCCGCTGTGG
CGGCAGCTTG TCACTTACGT CTGGGGCGTT GTTGTCCATT TCGATTTCGG GCCTTCCTTT
ATTTACAAGG ACCGCACGGT CAATGAGATC ATCGCGCAGG GCTTTCCCGT TACCCTGACC
TATGGCTGCA TCTCCTTTGT GGTGGCTGTT TTGATTGGCG GTGCCCTCGG CATCTGTGCT
GCCGTTTGGC ACAATAGCTG GCTGGATTAT CTGGCGGTTG GGGTCGCCAT CGGCACCCAT
GTGCTGCCAA GCTTTGTGCT GGCACCCATT CTGGTTCTGA TCTTCACCCT TTGGCTTGGC
TGGTTGCCGG GCGGCGGCTG GGAGGGTGGG CAATGGCCCT ATCTGATCAT GCCGGTGATT
TCACTCTCAG TCTTGTTCAT TGCCTCCATC TCGCGGCTCA CCCGCTCGTC TATGCTGGAA
GTGCTGAATG CCAACCACAT CCGCACTGCC CGCGCCAAGG GCCTACCAGC ACGGGTGGTG
ATTTTTCGCC ACGCGCTCAT TCCGGCGCTG CTGCCAGTGA TTTCCTATCT CGGGCCTGCC
TTTGTCAGCA TGATCACCGG ATCTGTGGTG GTGGACATGT ATTTTTCAAC CGGCGGCATT
GGCAAGTTTT TCGTCGATGC GGCGCTGAAC CGTGACTATG CCGTGATGAT GGGCATAACC
ATTCTCATCG GCGGCCTGAC AATTCTGTTC AACCTTGTGG TCGATCTTCT CTATGCGTGG
ATTGATCCGA AAATCCGGTA CTGA
|
|---|
| Protein sequence | MLVYVLRRLA VAIPTLLILI ITSFLLMKAA PGGPFTTEKA LAPEILANLN AKYGLDAPLW
RQLVTYVWGV VVHFDFGPSF IYKDRTVNEI IAQGFPVTLT YGCISFVVAV LIGGALGICA
AVWHNSWLDY LAVGVAIGTH VLPSFVLAPI LVLIFTLWLG WLPGGGWEGG QWPYLIMPVI
SLSVLFIASI SRLTRSSMLE VLNANHIRTA RAKGLPARVV IFRHALIPAL LPVISYLGPA
FVSMITGSVV VDMYFSTGGI GKFFVDAALN RDYAVMMGIT ILIGGLTILF NLVVDLLYAW
IDPKIRY
|
|---|
| |