| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7021 |
|---|
| Symbol | |
|---|
| ID | 7380219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 21645 |
|---|
| End bp | 22625 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641169 |
|---|
| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
|---|
| Protein accession | YP_002539466 |
|---|
| Protein GI | 222102427 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA AACCCGATCT TCTGGTTATT GAAAACCTCG TCAAGCGCTT TCCGGTGAAG
CGCGATACGT TTTTCGGCCC CGCCCGCTAT GTCCATGCTG TCGCGGATGT GAACTTTTCC
GTGCGCAGAG GCGAGACGGT TGGCCTTGTC GGCGAATCTG GATCGGGAAA GACCACCATA
GGCCGACTGG TCATGCGTCT GGATGAGCCA AGCAGTGGCA ATATCGTCTT CGACACGCAG
AATATTGGAA ATCTTGTCGA GCGCGATACC CTGCCTTTTC GCAAGCGCAT TCAGATGATT
TTCCAGGACC CATTTTCGAG CCTCAACCCG CGGATGCGGG TGGGCGCGCA GATTGCGGAA
GGGCTTGAAG TGCATGGCAT TGGCAACAAG GCGGACCGCG TGCGCCGCGT GACGGAGATG
CTGGATCTGG TCGGCCTGCC GGTGGATGCC GCAAGCCGTT ACCCGCACGA GTTTTCCGGC
GGCCAGCGTC AGCGCATCGT GATTGCCCGC GCGCTGATCG TTGAGCCCGA ATTCGTTGTG
GCCGATGAGC CTGTCTCAGC GCTTGATGTG TCCGTCCAGG CACAGGTTCT GAACCTCCTG
CAGGATCTTA AAGAGAGGCT ACATCTGACG ATGCTGTTCA TCTCGCACGA TCTCGCTGTC
GTGGAGCATT TATGCGACCG CGTCGTGGTG CTTTATCTTG GGCGGGTGAT GGAGATTGCG
CCTCGCGACG CGCTATATGA GCGCCCGCGC CATCCCTATA CGGAGGCGCT TCTTTCGGCC
TCGCCTGTTC CAGACCCTGA CCACCAGCCG ATCCGCGCCA TGACAGAGGG TGATCTTCCC
AATCCGATCG ATCAGCCGAG CGGCTGCGTA TTCCGAACAC GGTGCCGTTA CGCCATGCCG
GCTTGCGCGC AAACCGTGCC GCCCTTGCTG GCGGTGGGTC TCGATCATGT GACGGCCTGC
CTGCGCGATG ATATCCTTTA G
|
|---|
| Protein sequence | MSDKPDLLVI ENLVKRFPVK RDTFFGPARY VHAVADVNFS VRRGETVGLV GESGSGKTTI
GRLVMRLDEP SSGNIVFDTQ NIGNLVERDT LPFRKRIQMI FQDPFSSLNP RMRVGAQIAE
GLEVHGIGNK ADRVRRVTEM LDLVGLPVDA ASRYPHEFSG GQRQRIVIAR ALIVEPEFVV
ADEPVSALDV SVQAQVLNLL QDLKERLHLT MLFISHDLAV VEHLCDRVVV LYLGRVMEIA
PRDALYERPR HPYTEALLSA SPVPDPDHQP IRAMTEGDLP NPIDQPSGCV FRTRCRYAMP
ACAQTVPPLL AVGLDHVTAC LRDDIL
|
|---|
| |