| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7017 |
|---|
| Symbol | hyuB |
|---|
| ID | 7380215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 17011 |
|---|
| End bp | 18726 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643641165 |
|---|
| Product | hydantoin utilization protein |
|---|
| Protein accession | YP_002539462 |
|---|
| Protein GI | 222102423 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0146] N-methylhydantoinase B/acetone carboxylase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGA AAGATCCAGT CCTTCACTTG GCAGGGGTTC CCAGCAAGGG GCTTGCCGTC
AACTCCGATC CAATCACGAC GGAAGTCGTG CGGCATGCGC TCAATTCGGC CGCCAACCAG
ATGAAGCGGG CGCTGATCCG TACGGCTTTC TCGCCGATCA TTTACGAGGT GCTGGACTTT
GCTGTCGCCA TCTATGATCG CGAGCTGCGC ATGCTCTCTC AAGCGCCAAG CCTTCCCATC
TTCATGGGAA CGCTGAACTT TGCCGTGCGC GAGGCTGTCA AGAATATCGG CGGCGAAGAC
AAGATCTTCG ATGGCGACAT CCTGATGTAC AATTGGCCTT ATGGCACTGG TTCGCATCCC
CAGGACATGG TCATCATCAT GCCGGTCTTC TATCGGCAGG ACCTGATTGG GTACACGGCG
ATCAAGGGCC ACTGGCTCGA TATCGCCGCC AAGGATCCCT ATTGCACCGA CACCACGGAT
GTCTTCCAGG AAGGCACGAT CTTCCCGGGC GTGAAGATCT ACAAAAAGGG CGAGCTTAAT
GACGACATCT ATCGCATGAT CCTCGGCAAC AGCCGCGTTC CCAAGGCCGT ATCGGGTGAC
CTCGATGCCC AGGTTACCGG ATGCCGCGTC GGAGCCAAGA GCTTCCTCGA AGTAGTGGAG
CGTTTCGGCC TCGACACGTA TCGCAATGCT GTCGAGCATA TGTTCGACCA TGGAGAGGCC
ATCATTCGCA GCTTCTTCGA GAAGATTCCC GATGGCCGCT ATGTGGGCAA TGGGGAAATG
GACGACAACG GCGTCACCAA GAACCGAATT CCCTTTGAAA TCACTGTCGA CGTGAAGGGC
TCGGACGTCA CCATCGACTT TTCCGAAACC CCTGATGCGC AGGGCGGTCC CGTCAACAGC
CCCCTGCCAT CGACGATCTC CGCGAGCCGT GTTGCGATTA CCATGCTTGC CGGCTATGGC
GAAGCGCCCC ATGAAGGCCA CTTCCGGCCT ATCAAGGTCA TCACCCGCCC CGGCAGTATG
TTCGATCCCG AACCGCCGTC TCCCTGCTTT CTCTATGGCT GGTCGGCTTT GCAGGCAATC
GAAGTCATCT ACAACGCTAT CTCCAAGGCG CTGCCTTCAT CTGTTCCGGC CTGCTCTGGC
GGGTGTATTT GCTCGGTCGT CTGGTGGGGA ACCCGCGAGG AAACCGGCGA GGCCTGGGCG
GATGGTGCCC CGCATCCGAC CGGGCAGGGT GCCTGGGATG GCGGCGATGG CGGCACCATG
CTGCATATCT CGGAATCGGC CACGCGCTTC ACCCCGGTCG AAGTATGGGA GGCCCGCAAT
CCTTTCCTCG TCGAGCGCCT TGCTCTGGCG CAGGATTCCG TCGGTCCCGG CAAATATCGT
GGCGGACCAG GCATCGATCT CTTCTTTGAG ATGACGGAAG ACACATTCAT CACAACGGTG
TTCGAACGCT CGAAGAGCCA GCCCTGGGGA CTTGAGGGCG GCCTTGGTGG CCGTGCGAAC
AATGCAATGG TGGTCATGCC GGACGGCACA GAACATATCG TTCCGAAAAC CACGCATTTT
CTCGTCCCTA AGGGCGGCTT GCTCAAGCTG CAAACCGGCG GCGGCGGCGG ATATGGCGAG
CCCGCTGAGC GACCTCTGGA GAAGATCCAG GCCGATCTCG ATGACGGTTA TATCTCTGAG
GCCTTTGCGC GACAGCATTA TCCGCACGCA TTCTGA
|
|---|
| Protein sequence | MKRKDPVLHL AGVPSKGLAV NSDPITTEVV RHALNSAANQ MKRALIRTAF SPIIYEVLDF
AVAIYDRELR MLSQAPSLPI FMGTLNFAVR EAVKNIGGED KIFDGDILMY NWPYGTGSHP
QDMVIIMPVF YRQDLIGYTA IKGHWLDIAA KDPYCTDTTD VFQEGTIFPG VKIYKKGELN
DDIYRMILGN SRVPKAVSGD LDAQVTGCRV GAKSFLEVVE RFGLDTYRNA VEHMFDHGEA
IIRSFFEKIP DGRYVGNGEM DDNGVTKNRI PFEITVDVKG SDVTIDFSET PDAQGGPVNS
PLPSTISASR VAITMLAGYG EAPHEGHFRP IKVITRPGSM FDPEPPSPCF LYGWSALQAI
EVIYNAISKA LPSSVPACSG GCICSVVWWG TREETGEAWA DGAPHPTGQG AWDGGDGGTM
LHISESATRF TPVEVWEARN PFLVERLALA QDSVGPGKYR GGPGIDLFFE MTEDTFITTV
FERSKSQPWG LEGGLGGRAN NAMVVMPDGT EHIVPKTTHF LVPKGGLLKL QTGGGGGYGE
PAERPLEKIQ ADLDDGYISE AFARQHYPHA F
|
|---|
| |