| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7008 |
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| Symbol | |
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| ID | 7380208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | - |
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| Start bp | 7955 |
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| End bp | 9118 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643641160 |
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| Product | phage integrase family protein |
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| Protein accession | YP_002539457 |
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| Protein GI | 222102418 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCAGA TCGTCGAGAA AGACACCGAA ATTCACGTCG AGCAGACCTC AGCGCCGCCG
CTCAGCACGG CGGTTGAGGG TAATGTTTGC GCGCCGCCGC TGTCGGCCGC CGGCCTCTCG
CTGCAGGCCC CTCCCCTGCT CTCTCCAGTC AACGAGGACC AAACGCCGAC GCATCTCACC
AGCCTGGCGA GCCGCGCCCG CGATTATGTG GAGGCGGCAC GTTCTGCCAA CACGCGTAAA
GCCTATGCCT GCGATTGGAA GCATTTTAGC GCCTGGTGCC GACGGTTGAA TTTGCGGCCC
CTCCCCCCGG ACCCGCAGAC CGTTGGCCTC TATATCACCG CCTGCGCCTC AGGCAATGCC
GTTGGAACAC CGACGCGTGG CGCCAAGACA AACGCGGTTT CGACCATCGA ACGTCGCCTC
TCCTCATTGT CTTGGAACTA CGCGCAGCGC GGACTCACGC TCGATCGCAA GGATCGGCAT
ATCGCCACCG TCATGGCCGG TATTCGAAAC AGCCACGCCC GCCCGCCCGT GCAGAAGGAA
GCGGTGTTGG CCGAGGATAT CATCGCGATG ATCGAGACAC TCGATCGGGG AACGCTGAGA
GGTTTGCGCG ATCGGGCCAT GCTGCTGATC GGTTATGCCG GTGGTCTGCG GCGGTCCGAG
ATTGTCGGTC TCGACATCAA ACCTGACCAA ACCGAAGACG GGCGCGGCTG GATCGAAATA
TTCGACAAAG GCATGCTCGT CACCCTGCGC GGCAAGACGG GCTGGCGCGA GGTCGAAATC
GGCCGCGGAT CCTCCGATAC CACCTGCCCG GTGGTCGCTG TCGAAAGCTG GATCACCTTT
GCCAGACTTG CCCATGGCCC CCTCTTCCGC CGCGTCACAG GACAAGGCAA GTCCATTGGG
CCAAACCGTT TGAACGATAA GGAAGTGGCA AGGCTGGTCA AGCGGGCTGC CATGGCTGCC
GGGGTTCGTG GCGATCTCAG CGAGATTGAA CGCGCCTTCA AATTCTCCGG CCATTCCCTG
CGCGCCGGTC TCGCCTCCTC CGCCGAAGTC GACGAACGCT ATATCCAGAA GCAACTCGGT
CATGCCTCAG CCGAGATGAC CCGTAGGTAC CAGCGGAGAA GGGATCGTTT CAGGGTCAAT
TTGACCAAAG CCGCGGGACT TTAA
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| Protein sequence | MAQIVEKDTE IHVEQTSAPP LSTAVEGNVC APPLSAAGLS LQAPPLLSPV NEDQTPTHLT
SLASRARDYV EAARSANTRK AYACDWKHFS AWCRRLNLRP LPPDPQTVGL YITACASGNA
VGTPTRGAKT NAVSTIERRL SSLSWNYAQR GLTLDRKDRH IATVMAGIRN SHARPPVQKE
AVLAEDIIAM IETLDRGTLR GLRDRAMLLI GYAGGLRRSE IVGLDIKPDQ TEDGRGWIEI
FDKGMLVTLR GKTGWREVEI GRGSSDTTCP VVAVESWITF ARLAHGPLFR RVTGQGKSIG
PNRLNDKEVA RLVKRAAMAA GVRGDLSEIE RAFKFSGHSL RAGLASSAEV DERYIQKQLG
HASAEMTRRY QRRRDRFRVN LTKAAGL
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