| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7005 |
|---|
| Symbol | |
|---|
| ID | 7380207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011981 |
|---|
| Strand | + |
|---|
| Start bp | 5807 |
|---|
| End bp | 7513 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643641159 |
|---|
| Product | GGDEF family protein |
|---|
| Protein accession | YP_002539456 |
|---|
| Protein GI | 222102417 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTGA ACCACCAGTT TGGCAATCGT AAAAATAGTT TTGATTTGGA CGCTGCAGCC
GCGCTGGATG AAGCTTGGGA CCTCGCTTGC AAGGGGCGTT CCGTTCGCGC ATTTTCTTTA
GCAAATTCAG TTTTGGCTTC GGCAGAACAG CGCGGTGATC AAGGTCTTAT AGCGGGGAGT
TCTCAGCAAT GTGCCTGGTA TTGCTTTCAA CTTGGTGAGA CAGAGACGGG GCTAGTATAC
GTGGAGAAAG CAATTTCTCT GTGGAAGTCC CTTGAAGAGC CAATGCTTGA GGCACAAGCT
CTTAGTATCG GTGCTTGGCT GCATCTGGAA CTCGGTAATC TAGAGCAGGC TGTCGAGTTT
GCCGCAGAAG CACTCAACAT TGCCGACCAA AGCCGTAATC TCCGATCTCG GTCTTTGGCT
ATAAATGTGA TTGGCGTGAT ATTCTGGATG ACGCGTCAAC CATCTCTTGC TGTTGACTAT
TGCAGTCGTG CCGTGGAGCT AGCCCGAGAG GCATACGATA TTACATTCGA ATGTTGGTGG
TTGATTAATC TCGGTGGAGC GCATGCAGAG GATGCTTATC TCGCTCAGGA AGCCGATAAT
CAAAAATTCG AAACGTCGAT AAGCAGCGCA ATAGATATTA CGAAACAAGC GCTCAGCCTC
GCTCAATCAC TTAAAGACGC CTGGGCCGAG AGGTTGTGTA TCGCAAATTT AGCAGAGTAT
TTTAATGCGG TTGAGGCTTT TTCCGCCGCC GAAATGTTAT TGGAGCGGTA CCGTGACATT
CCGGGAGACG ATTATGTCCG CGGTGAGGGG CATTATCTGG TTACACTGGG AAGCACGCTC
GTTTCGTTAA AGCGCTACGA AGAGGCATTG GTACCACTTG AGCAGGCCCA CTTGCTTGCC
GGGGAAAATT TCAATCTTGA GACCTTAATG CATGCCTGTC TGTCTCTTTC AAAGGCTCAT
GAATATCTTG GAGCATTCGA GTCTGCGCTG GATTTTCATA AAAAGTATCA CAAGCTCCAT
CAGCAGTTCA CTGCGGAGCG GATCCAGCGA AATGCCCGTA TGGCGGAGAT CCGTTATGAA
ACGAAAAAGC TCAAAGCAAT GCTTGATACA GAGGCAGAGC GCTCTGCAGA AATTGCCCGG
TCATTAGAGG CCCTGCAACA GCAAACCAGT GTCCTGACCG AAGCGGCGAA TACGGACCCG
TTGACAGGAC TTTCCAATCG GCGGCATTTG GAGACGATAA TATCTGACAT TAATACTCAA
AGCGCGAGTT ATGCGCTGGC GATCCTTGAT GTCGATCACT TCAAGAAAAT CAATGATACG
TTTTCCCATA TTATTGGTGA TCGTGTGCTT GTGCAAATCG GGACGCTGGT CAAAGTTGTT
GTTCGTGAAA CAGATATCGC AGTTCGCTTC GGTGGCGAAG AGTTCGTCAT ACTTATGACG
GACCTAACAC TCGCCCACGC GGAAAGGGTT TCCGAAAGAC TGCGAATGAC AATTACCAAC
TTTGACTGGT CCGAAATTGC CGATGGGCTG AATGTGTCCG TCAGTATCGG AGTGGCAATG
TCAGACGATG CAGTCGACGC CGAAGCGGTT TTGCAACTGG CGGATCGGCG CCTTTATTGG
GCAAAGCAGA CCGGTAGAAA TAGAGTTGTT TGTTTTCTGC CGTCTGGAAA TCGGTTTGAA
CAAACGACCA GCGCGATTAC GGATTGA
|
|---|
| Protein sequence | MILNHQFGNR KNSFDLDAAA ALDEAWDLAC KGRSVRAFSL ANSVLASAEQ RGDQGLIAGS
SQQCAWYCFQ LGETETGLVY VEKAISLWKS LEEPMLEAQA LSIGAWLHLE LGNLEQAVEF
AAEALNIADQ SRNLRSRSLA INVIGVIFWM TRQPSLAVDY CSRAVELARE AYDITFECWW
LINLGGAHAE DAYLAQEADN QKFETSISSA IDITKQALSL AQSLKDAWAE RLCIANLAEY
FNAVEAFSAA EMLLERYRDI PGDDYVRGEG HYLVTLGSTL VSLKRYEEAL VPLEQAHLLA
GENFNLETLM HACLSLSKAH EYLGAFESAL DFHKKYHKLH QQFTAERIQR NARMAEIRYE
TKKLKAMLDT EAERSAEIAR SLEALQQQTS VLTEAANTDP LTGLSNRRHL ETIISDINTQ
SASYALAILD VDHFKKINDT FSHIIGDRVL VQIGTLVKVV VRETDIAVRF GGEEFVILMT
DLTLAHAERV SERLRMTITN FDWSEIADGL NVSVSIGVAM SDDAVDAEAV LQLADRRLYW
AKQTGRNRVV CFLPSGNRFE QTTSAITD
|
|---|
| |