| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3251 |
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| Symbol | |
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| ID | 7315626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 3399052 |
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| End bp | 3401250 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643618152 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002515306 |
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| Protein GI | 220936407 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.310798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACCTA CGGAAGCCCG CTCACAAGAG CCCAGCCCGG AAGAACAGGA AGACGGCATC
GCCCGGCTGC ACCAGGTGGC CGCCCAGAAC CTCGAGACCA CGCCCCCGGT GCTGGTCTCC
TATCTGGCCG TACCGGATGC GCGACTGACC CGTCTGCACA TCAGCCCGCA CTTCAAACAC
CTGGTCCAGG GCAATGGCGC CCACGGCGCC TACCTCAAGG ACCACGACCG CTGGGTGCAA
TACCTGCACC CGGAGGACCG GGAGCGGGTT CAGCAGGCCC TGGCCGGGAC CCGCGAAGCC
CAGAGCCCCT ACTGCATCGA TTACCGACTG AGTGACGCCA AGGGCGTCAC ACGCTGGGTC
CGGGACATGG GCATCTACGT GGGTGATCCC CAGCAGGGGG GCACGGTGAT CCAGGGCGTG
ATGATGGATG TCTCCCTGGA GCACGAGCTC AGGGACCGGA TCGAGGCCCT GGCCAAACAG
GCGCGTCGGG CGGAGGCCGA GGCCGCCGCC TCCAAGGCCG GTGAACTGCT GCAGCAGATG
CACGAAACCC TGGAACACAC GGCCTCCGCC ATCCTGCGCC TCGACGCCGC CGGCAGGATC
AGCTACGCCA ACCAGGCCGC CCTGCGGCTC ACCGGTCATA CCCGCCCCGA GCTGCTCGGC
CACGACTTTG CCCAGGCCCT GCTGAACGCC CCCGAAGGAC GCCGCCCCGC CGACGGCCCT
GCCCCATATC TGAAGGACTG CCGAGAGGTC CTGCGCTCGC GCCAGCCGCA CCACCTGCAA
GGGCTCACCC TGTGGCGCAA GGACGCACGC CCCCTGGAGA TCAACTGCCA GCTGGCGCCC
GGTGCCGAGG GTGGCGCGAT CCTCACCCTG GAGGACGCCA CCGAGTACCG CTCCCTCAGC
ACGCAGCTGC AATACCAGGT GACCCACGAC GCCCTCACCG GACTGCTCAA CCGCCGGGAG
CTGCTCATCC GCCTGGAACA GGCCCTGCGC CAGGCCCGCA ACGGTCACAA CAACGGGGCC
ATGCTGTATA TCGATCTGGA CCAGTTCAAG GTCATCAACG ACACCAGCGG CCACACCGCC
GGCGACGAAC TGCTGCGCCA GATCAGCAGC CTGCTCACCG GCGCCATTCG CCAGGGCGAT
GCCCTGGCCC GGCTGGGGGG TGACGAGTTT GCGGTGATCC TCAACGACTG CCCCGCCAGC
GAGATCATGG ACACCGCCGA CCAGCTGCGT GAGCACATCG CCGACCATGT GTTCCGCTGG
GAGGACAAGT CCTACAACGT CACCGCCAGC ATCGGCGTGG TGCCCATCAA CCGCGAAAGC
GGCAATGTGA TCACCGTGAT GAGCGCCGCG GACACCGCCT GCCATTCCGC CAAGGACAAG
GGTCGCAACC GCATCCACGC CTTCAAGCTG GACGACACCA GCATGATCCG CCGCCAGGGC
GAGATGCGCT GGGTGGCACG CATCCACCAG GCGGTGCAGG AAGGTCGCTT CTCCCTGTTT
GCCCAGACCA TCCAGCCGGT GGAGGCGAGG GAAAAACATC GCGGTACGCA CCTGGAGATG
CTGATCAAGA TGCAGGGCGA GGGTGACGAG TTGATCCCGC CCGGCGTGTT CCTGCCGGCG
GCGGAGCGCT ACAACCTCTC CGGCACCATC GACCGCTGGG TGCTGCAGCA CACCTTCTCC
TGGATCGCGG ATGCAGGGCT CGACGAAAAC CGCCTGTCCC TGTGCGCCAT CAACCTATCC
GGACATTCCG TCGGCGACCC CGCCTTCCTG GACTACGTGG TGTCACAGCT CAAGCGTCAC
GCCCTGCCCG CCACCCTGAT CTGTTTCGAG ATCACCGAGA CCGTGGCCAT CGCCAATCTC
AACCAGGCGC GCACCATGAT GGAGACCCTG GGCGGCATGG GCTGTCGCTT CGCCCTGGAC
GATTTCGGCA GCGGCATGTC CTCGTTCGGC TACCTGCGCA CCCTGCCGGT GGACTACCTG
AAGATCGACG GCCTGTTCGT CAAGGACATC GCCAAGGACC CCACCGACCT GGCCCTGGTG
CGCTCCATCA ACGACATCGC CCACGTGATG GGCAAGCGCA CCATCGCGGA ATTCGTGGAA
TCCCAGGAAA TCCTCGACCG CCTGCAGGAG ATGGGCGTGG ACTACGCCCA GGGCAACTTC
ATCGCCGAAC CGGTGCCGGT GGCGGAGTTG CGGATCTAG
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| Protein sequence | MKPTEARSQE PSPEEQEDGI ARLHQVAAQN LETTPPVLVS YLAVPDARLT RLHISPHFKH
LVQGNGAHGA YLKDHDRWVQ YLHPEDRERV QQALAGTREA QSPYCIDYRL SDAKGVTRWV
RDMGIYVGDP QQGGTVIQGV MMDVSLEHEL RDRIEALAKQ ARRAEAEAAA SKAGELLQQM
HETLEHTASA ILRLDAAGRI SYANQAALRL TGHTRPELLG HDFAQALLNA PEGRRPADGP
APYLKDCREV LRSRQPHHLQ GLTLWRKDAR PLEINCQLAP GAEGGAILTL EDATEYRSLS
TQLQYQVTHD ALTGLLNRRE LLIRLEQALR QARNGHNNGA MLYIDLDQFK VINDTSGHTA
GDELLRQISS LLTGAIRQGD ALARLGGDEF AVILNDCPAS EIMDTADQLR EHIADHVFRW
EDKSYNVTAS IGVVPINRES GNVITVMSAA DTACHSAKDK GRNRIHAFKL DDTSMIRRQG
EMRWVARIHQ AVQEGRFSLF AQTIQPVEAR EKHRGTHLEM LIKMQGEGDE LIPPGVFLPA
AERYNLSGTI DRWVLQHTFS WIADAGLDEN RLSLCAINLS GHSVGDPAFL DYVVSQLKRH
ALPATLICFE ITETVAIANL NQARTMMETL GGMGCRFALD DFGSGMSSFG YLRTLPVDYL
KIDGLFVKDI AKDPTDLALV RSINDIAHVM GKRTIAEFVE SQEILDRLQE MGVDYAQGNF
IAEPVPVAEL RI
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