Gene Tgr7_3224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_3224 
Symbol 
ID7315597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand- 
Start bp3371746 
End bp3372171 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content54% 
IMG OID643618123 
Producttype IV pilin 
Protein accessionYP_002515279 
Protein GI220936380 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCAGC AACGCTACCA ACAAAGAACG AGCGGATTCA CGCTGATCGA AGTGATGATC 
GTGGTGGTGA TCATCGGCAT CATCGCCGCC ATAGCTTACC CATCCTATAC CCGGCATGTG 
CAGGATACTC GCATGGCAAC GGCGCAGGCA GACCTGATGG AGCTTGCCCA GTGGATGGAA 
CGGCAATACA CGCTGAATAA CTCATTCGCC GGACTTACAA CGGGCAATCT GCCATTCAGC 
GCGTCTCCAA AAGATGGTAA TACTACTGCT TACAACCTAA CGCTGGGCAA TATCACTGCG 
AATACCTACA CATTGACAGC AACGCCAACA GGGCCGCAAG TGGGTCATGG GTGTGGCACT 
CTGACACTCA ACCAAGCAGG TGCACGCACA CCAGATCCAG CAACGAATCC GAATTGCTGG 
CGCTGA
 
Protein sequence
MSQQRYQQRT SGFTLIEVMI VVVIIGIIAA IAYPSYTRHV QDTRMATAQA DLMELAQWME 
RQYTLNNSFA GLTTGNLPFS ASPKDGNTTA YNLTLGNITA NTYTLTATPT GPQVGHGCGT 
LTLNQAGART PDPATNPNCW R