| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3124 |
|---|
| Symbol | |
|---|
| ID | 7317354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | + |
|---|
| Start bp | 3274336 |
|---|
| End bp | 3276219 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643618023 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_002515180 |
|---|
| Protein GI | 220936281 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.791613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCT GGACCCTGGA CCAAGCCCGC GCCCTCTACA ACATCGGCAA CTGGAACGGC
GGCTACTTCC ATATCAACGA CCGGGGCCGG GTGTGCCTGC GGGTGCCGGA GCGGCCCGAG
CACCCGGGGG TGGACCTCTT TGAACTGGCC CAGTCCCTGC GGGAATCCGG CCAGTCAAGC
CTGCCGGTGC TGATCCGCTT CCAGGACATC CTCACCGACC GGGTGCACCG CCTGCGTCAG
GCCTTCGACA ACGCACGGGC CGAGACCGGC TTTACCGGCA ACTACACCGC CGTCTACCCC
ATCAAGGTGA ACCAGCAGCG CTCCGTGGTG GAGCAGATCC TCGAGGCCGG CGGCGACCGG
GTGGGCCTGG AGGCGGGCAG CAAGCCGGAG CTGATGGCGG TGCTGGCACT CTCGCGCCCC
GGCGGCGTGA TCGTGTGCAA TGGCTACAAG GACCGGGAGT ACCTGCGCCT GGCCCTGATC
GGCCGGCTGC TGGGCCACCG GGTCTACATC GTCATCGAGA AGCCCTCGGA GCTGGACGGC
GTCATGGAGG CGGCCCGGGA TCTGGGCGTG CGCCCCATGC TGGGCATGCG CGTGCGCCTG
GCCTCCATCG GCAAGGGCAA GTGGCAGAAC ACCGGCGGCG AGAAGGCCAA GTTCGGGCTC
TCCGCCAGCC AGTCCCTCAA GCTCCTGGAG CGCCTGCGGG ATGCCGACAT GCTGGACTGC
ATGCAGCTGC TGCACTTTCA CATGGGCTCC CAGATCGCCA ACATCCGCGA CATCCAGGCG
GGCATGGGCG AGGCCGGGCG CTTCTACGCC GAGCTGCGCC GCCTGGGCGC GGACATCCAG
GTGGTGGATG CCGGCGGCGG CCTGGGGGTG GACTACGAGG GCAGCCGCTC GCGCAACGAC
TGCTCCATGA ACTACAGCCT GCAGGAGTAC GCCAACAACA TCGTGCGCGG CATCATGAAC
ACCTGCCGCG AGTACGACCT GCCCCACCCG CAGATCTTCA CCGAGTCCGG CCGCGCGCTC
ACCGCCCACC ACGCGGTGCT GGTGACCAAC GTCATCGACA CCGAGCGCGC CCCCGAGCAG
GGCGACCTCT CGCCGCCCGC CGGGGACGAG CCCCTGATCC TGCAGGACAT GTGGCAGCTC
TACGAGAACG CCGAGGGTGT CGCCCCCACC GAGGTCTACC ACGACATGGC CCATTGGCTT
TCCGAGGCCC AGGCCATGTA CACCCACGGG GTGCTGGACC TGGCCCAGCG GGCCCGGGCC
GAGACCCTGT ACGCGGCCAC CTGCCGCCGG CTGGTGGGCG ATGCCTCCCT GCGCCTGCCG
GCGGAGATCC GTCACGAGAT CACCGAGAAG CTGGCGGACA AGTACTTCTG CAACTTCTCC
GTGTTCCAGT CCATCCCGGA CGTCTGGGCC ATCGACCAGA TCTTTCCCAT CATGCCCCTG
CACCGCCTGG ATGAGGCCCC CGGCCAGCGC GCTGTACTGC AGGACCTGAC CTGCGACTCC
GACGGCCACG TGGACCGCTA CGTGGAGGCC GGCGGCACCG ACACCAGCCT GCCCCTGCAC
CCGCTGCGCG AAGGCGAACC CTACCTGCTG GGCATCTTCC TGGTGGGCGC CTACCAGGAG
ATCCTGGGCG ACCTGCACAA CCTGTTCGGC GACACCGACT CCATCAACGT GGCCCTGGAG
GCCGACGGCG GCTACCGGCT GGAACATCCG GAACGGGGCG ATACCGTGGA CGAACTGCTG
CGCTACGTGC ACTTCGACCC CGAGTCCCTG GCCGTCGCCT ACCGCCAGAA GGTGGCTGCC
GCGGGGCTCG ACCAGGACCG GGGCCGGCGC ATCCTGGCGG AACTGGAGCA CGGTCTGTCG
GGATATACCT ACCTGGAGGA GTGA
|
|---|
| Protein sequence | MTAWTLDQAR ALYNIGNWNG GYFHINDRGR VCLRVPERPE HPGVDLFELA QSLRESGQSS
LPVLIRFQDI LTDRVHRLRQ AFDNARAETG FTGNYTAVYP IKVNQQRSVV EQILEAGGDR
VGLEAGSKPE LMAVLALSRP GGVIVCNGYK DREYLRLALI GRLLGHRVYI VIEKPSELDG
VMEAARDLGV RPMLGMRVRL ASIGKGKWQN TGGEKAKFGL SASQSLKLLE RLRDADMLDC
MQLLHFHMGS QIANIRDIQA GMGEAGRFYA ELRRLGADIQ VVDAGGGLGV DYEGSRSRND
CSMNYSLQEY ANNIVRGIMN TCREYDLPHP QIFTESGRAL TAHHAVLVTN VIDTERAPEQ
GDLSPPAGDE PLILQDMWQL YENAEGVAPT EVYHDMAHWL SEAQAMYTHG VLDLAQRARA
ETLYAATCRR LVGDASLRLP AEIRHEITEK LADKYFCNFS VFQSIPDVWA IDQIFPIMPL
HRLDEAPGQR AVLQDLTCDS DGHVDRYVEA GGTDTSLPLH PLREGEPYLL GIFLVGAYQE
ILGDLHNLFG DTDSINVALE ADGGYRLEHP ERGDTVDELL RYVHFDPESL AVAYRQKVAA
AGLDQDRGRR ILAELEHGLS GYTYLEE
|
|---|
| |