Gene Tgr7_3111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_3111 
Symbol 
ID7317341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand
Start bp3259700 
End bp3261343 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content63% 
IMG OID643618010 
ProductNifA subfamily transcriptional regulator 
Protein accessionYP_002515167 
Protein GI220936268 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID[TIGR01817] Nif-specific regulatory protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGCGA CTGCCCTTGC CGGTGGGGAC GGTATCAAGC AACAACTCTC GGTGATCCAG 
GAGATCGCCA AGCTGCTGGA CCGGCCGCTG GATCCTCCGC GCACCGTGCA GAGCATTCTC
AGATTGCTGT CCCAGATGCT GGGGCTGAAC TGTGGTCGCG TACTGGCACC CGACAGTTCA
GGGCTGGTGC TGGAGGTGAA GTATTCCTAT GGGCTGACCC ATGCGCGTCT CGCCCAGGGC
GCCTTTTCCG TGGGCTACCA CGAGGGCGTG ACCGGCTTCG TGATGCGCAC GGGTACCATA
GGCCTGGTCA CCGACATCGA TCAGGAGCCG CTCTATCTGC AGCGCATCAC GGAGCGAAGC
GGCGGGAGCC ATTCACCCAT TGCCTTTATC GCGGTGCCCA TCCTGGAGTC GGGAACGCCC
ATCGGCGTGC TGTCGGTGCA ACGGGAAGGC ATCCGTCACC GCGCCTTCGA TTCCGATATC
GCGGTGCTCC GGGTGGCGGC CTCGGCCATC GGTCAGGTCA TGCGCATTCG CCAGTTCCTG
AACCAGCAGA CCGAGCACCT GATGCAGGAA AACCAGAGTC TCAAGAACTC CATCGTCATG
GAGGGCATGC TCCAGAAGAG CCTCTCCCAC GGCATCATCG GCTCCAGTGA ATCGCTCATG
AAGGCCGTCA AGCAGTGCAT GCAGGTGGCC CACAGCGAGG CGCCGGTGAT GCTGCTCGGC
GAGTCCGGTA CCGGCAAGGA GAAGTTTGCC CGCATGATCC ACCAGCAGAG TGACCGCAGC
GAGCACCCCT TCGTGTGCAT CAACTGCGCG GCCATCCCGC CGGACCTCCT GGAGGCGGAG
CTGTTTGGTT ACGAAAAGGG CAGTTTCACC GGCGCGAACG GCGCCAAGAA AGGCAAGATC
ATGCTGGCCG ATGGCGGCAC CCTGTTCCTG GACGAGATCG GTGACATGCC CCTGCAGTTG
CAGGCGAAGC TGCTCCGGGT CCTCCAGGAG CGCCAGGTGG ATCCCATCGG CTCCACCCGA
GGCGTGCCGG TCAACTTCAG GCTCATCACG GCCACCCACG TGAACATGCA GGAGCATGTC
AATGCGGGGC ATTTTCGTCT CGATCTCTTC TATCGCCTCA ACGTGGTGCC CGTGTACCTG
CCGCCCCTGC GCACCCGGCA CGAGGACATA CGACCGCTGG CCCTGCACTT CCTCAATGAA
CTCAATCACC GCTACCGGCG CAACATCACC CTGCATCCGG CCGCCCTGCA CGTGCTCGAG
CGCTACAGCT GGCCGGGTAA CGTGCGCCAG CTACAGAACG TGCTGGAACG GGCCATGCTG
ATGGTGGAGG ACGAGGTGAT CGATCAGGAA CAGATGACGC GCATCCTGGC GGAGCAGAGT
GCGGTGAAGC TGCCCAAGCA GGGTCCTGAC AGGCCCGTGG AGGCCGGCAT GGCAGAGGAA
CGCGGCGTGC GCGGCGAGGC ATTCTTGACC GGGGCCATGC CCCGGGCCTA CCAGTGGGTG
CACCAGGATG ATGCGCAACG CATCCGCAAT GCCCTAGAAC AGACCCGTGG CAACCAGGCG
GGGGCCGCGA GGCTTCTCAA CCTGACGACC CGACAGTTGC GCTACAGAAT GGAAAAACTC
GGTCTTCGCA TGGTCCGTGA CTAG
 
Protein sequence
MTATALAGGD GIKQQLSVIQ EIAKLLDRPL DPPRTVQSIL RLLSQMLGLN CGRVLAPDSS 
GLVLEVKYSY GLTHARLAQG AFSVGYHEGV TGFVMRTGTI GLVTDIDQEP LYLQRITERS
GGSHSPIAFI AVPILESGTP IGVLSVQREG IRHRAFDSDI AVLRVAASAI GQVMRIRQFL
NQQTEHLMQE NQSLKNSIVM EGMLQKSLSH GIIGSSESLM KAVKQCMQVA HSEAPVMLLG
ESGTGKEKFA RMIHQQSDRS EHPFVCINCA AIPPDLLEAE LFGYEKGSFT GANGAKKGKI
MLADGGTLFL DEIGDMPLQL QAKLLRVLQE RQVDPIGSTR GVPVNFRLIT ATHVNMQEHV
NAGHFRLDLF YRLNVVPVYL PPLRTRHEDI RPLALHFLNE LNHRYRRNIT LHPAALHVLE
RYSWPGNVRQ LQNVLERAML MVEDEVIDQE QMTRILAEQS AVKLPKQGPD RPVEAGMAEE
RGVRGEAFLT GAMPRAYQWV HQDDAQRIRN ALEQTRGNQA GAARLLNLTT RQLRYRMEKL
GLRMVRD