Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tgr7_3111 |
Symbol | |
ID | 7317341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thioalkalivibrio sp. HL-EbGR7 |
Kingdom | Bacteria |
Replicon accession | NC_011901 |
Strand | - |
Start bp | 3259700 |
End bp | 3261343 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643618010 |
Product | NifA subfamily transcriptional regulator |
Protein accession | YP_002515167 |
Protein GI | 220936268 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCGA CTGCCCTTGC CGGTGGGGAC GGTATCAAGC AACAACTCTC GGTGATCCAG GAGATCGCCA AGCTGCTGGA CCGGCCGCTG GATCCTCCGC GCACCGTGCA GAGCATTCTC AGATTGCTGT CCCAGATGCT GGGGCTGAAC TGTGGTCGCG TACTGGCACC CGACAGTTCA GGGCTGGTGC TGGAGGTGAA GTATTCCTAT GGGCTGACCC ATGCGCGTCT CGCCCAGGGC GCCTTTTCCG TGGGCTACCA CGAGGGCGTG ACCGGCTTCG TGATGCGCAC GGGTACCATA GGCCTGGTCA CCGACATCGA TCAGGAGCCG CTCTATCTGC AGCGCATCAC GGAGCGAAGC GGCGGGAGCC ATTCACCCAT TGCCTTTATC GCGGTGCCCA TCCTGGAGTC GGGAACGCCC ATCGGCGTGC TGTCGGTGCA ACGGGAAGGC ATCCGTCACC GCGCCTTCGA TTCCGATATC GCGGTGCTCC GGGTGGCGGC CTCGGCCATC GGTCAGGTCA TGCGCATTCG CCAGTTCCTG AACCAGCAGA CCGAGCACCT GATGCAGGAA AACCAGAGTC TCAAGAACTC CATCGTCATG GAGGGCATGC TCCAGAAGAG CCTCTCCCAC GGCATCATCG GCTCCAGTGA ATCGCTCATG AAGGCCGTCA AGCAGTGCAT GCAGGTGGCC CACAGCGAGG CGCCGGTGAT GCTGCTCGGC GAGTCCGGTA CCGGCAAGGA GAAGTTTGCC CGCATGATCC ACCAGCAGAG TGACCGCAGC GAGCACCCCT TCGTGTGCAT CAACTGCGCG GCCATCCCGC CGGACCTCCT GGAGGCGGAG CTGTTTGGTT ACGAAAAGGG CAGTTTCACC GGCGCGAACG GCGCCAAGAA AGGCAAGATC ATGCTGGCCG ATGGCGGCAC CCTGTTCCTG GACGAGATCG GTGACATGCC CCTGCAGTTG CAGGCGAAGC TGCTCCGGGT CCTCCAGGAG CGCCAGGTGG ATCCCATCGG CTCCACCCGA GGCGTGCCGG TCAACTTCAG GCTCATCACG GCCACCCACG TGAACATGCA GGAGCATGTC AATGCGGGGC ATTTTCGTCT CGATCTCTTC TATCGCCTCA ACGTGGTGCC CGTGTACCTG CCGCCCCTGC GCACCCGGCA CGAGGACATA CGACCGCTGG CCCTGCACTT CCTCAATGAA CTCAATCACC GCTACCGGCG CAACATCACC CTGCATCCGG CCGCCCTGCA CGTGCTCGAG CGCTACAGCT GGCCGGGTAA CGTGCGCCAG CTACAGAACG TGCTGGAACG GGCCATGCTG ATGGTGGAGG ACGAGGTGAT CGATCAGGAA CAGATGACGC GCATCCTGGC GGAGCAGAGT GCGGTGAAGC TGCCCAAGCA GGGTCCTGAC AGGCCCGTGG AGGCCGGCAT GGCAGAGGAA CGCGGCGTGC GCGGCGAGGC ATTCTTGACC GGGGCCATGC CCCGGGCCTA CCAGTGGGTG CACCAGGATG ATGCGCAACG CATCCGCAAT GCCCTAGAAC AGACCCGTGG CAACCAGGCG GGGGCCGCGA GGCTTCTCAA CCTGACGACC CGACAGTTGC GCTACAGAAT GGAAAAACTC GGTCTTCGCA TGGTCCGTGA CTAG
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Protein sequence | MTATALAGGD GIKQQLSVIQ EIAKLLDRPL DPPRTVQSIL RLLSQMLGLN CGRVLAPDSS GLVLEVKYSY GLTHARLAQG AFSVGYHEGV TGFVMRTGTI GLVTDIDQEP LYLQRITERS GGSHSPIAFI AVPILESGTP IGVLSVQREG IRHRAFDSDI AVLRVAASAI GQVMRIRQFL NQQTEHLMQE NQSLKNSIVM EGMLQKSLSH GIIGSSESLM KAVKQCMQVA HSEAPVMLLG ESGTGKEKFA RMIHQQSDRS EHPFVCINCA AIPPDLLEAE LFGYEKGSFT GANGAKKGKI MLADGGTLFL DEIGDMPLQL QAKLLRVLQE RQVDPIGSTR GVPVNFRLIT ATHVNMQEHV NAGHFRLDLF YRLNVVPVYL PPLRTRHEDI RPLALHFLNE LNHRYRRNIT LHPAALHVLE RYSWPGNVRQ LQNVLERAML MVEDEVIDQE QMTRILAEQS AVKLPKQGPD RPVEAGMAEE RGVRGEAFLT GAMPRAYQWV HQDDAQRIRN ALEQTRGNQA GAARLLNLTT RQLRYRMEKL GLRMVRD
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