| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_3028 |
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| Symbol | |
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| ID | 7315956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | + |
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| Start bp | 3168685 |
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| End bp | 3170820 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643617926 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_002515085 |
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| Protein GI | 220936186 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.390023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACTGG CGACACTCAC CTGCCTCCCC CACCGCAACC GGACGCCTGT GAAGGCATCT
GGCACGGGCC TGATGCGCAA CACCATCACC TTCTTCGCGC TGTGTCTGCT GCTGGCAGCC
ATCAGCAGCC CGGCACTGGC CCAGGGCAAC GTGCTCGAGC GCATCACCTA CACCACCCTG
CCGGGTGACC GGCTCCAGGT GACCATGGGC TTTGCCAGCC AGCCGGGAGA GCCGACCAGC
TTCACCATCG ACAACCCGGC GCGCATCGCC CTGGACTTTC CTGACACCCG TATCGGACTG
GCCCAGCGCA ACCAGGACAT CGGTGTCGGG CTGGCACGCT CCATCTCCAC CGCGGAAGCC
CGCGACCGCA CCCGCGTGGT GGTCAATCTG GTGCGCATGA TGGCGTTCGA GACCCAGGTG
CGCGGCAACG AACTGGTACT GACCCTGTCG CCTGATGCCG GCGCCCCTGC CGCCACAGCG
ACCCAGACCG CTGCTGCGGC CACTGCCCGA GCGGCTACCG GCGAGATCCG AATCAGCAAC
GTGGACTTCC GCCGCGGCGC CGAGGGTGAG GGTCGGGTCG TGGTGCACCT CACCGATCCC
AGGACCCGCG TGGATGTCCG TGAGCAGGCG GGCCGCATCG AGCTCAACTT CCTGCGTACC
GGCCTGCCCG AGGACCTGGA GCGCCGTCTG GACGTGATCG ACTTCGCGAC CCCGGTGCAG
ACCATCGATA CAATTCGAGA GTCCGACCGG GTTCGCATGG TCGTGGCTGC CACGGGCAGA
TACGACACCC TCTCCTACCA GGTGGAAAAC CGTTATGTCC TGGAAGTCAA GCCGATCACC
GAGGCCGAGG CCGAGGAGAT TCAGCGCGAC CGATTCACCT ACACAGGCGA ACGCCTGTCC
CTGAACTTCC AGGACATCGA GGTTCGCTCG GTGCTGCAGT TGATCGCCGA TTTCACCGAC
CTGAACGTGG TGGTGAGCGA CTCGGTCACC GGCAACATCA CCCTGCGCCT GCGCAACGTA
CCCTGGGACC AGGCCCTGGA CATCATCCTG CGCTCCAAGG GCCTGGGCAT GCGTGAGGCC
GGCAATGTGA TCTTTGTCGC CCCCACGGAA GAGATTGCCG CCCGGGAGAA GCTGGAAATG
GAAAGCCGCA AGCAGGTGGA AGAACTGGCC CCGCTGCGTG CTGAGTTCAT CCAGGTGAAC
TACGCCCGTG CAGATGACGT CGCTTCCATC ATCAGAAGTG ACCGCACCAC CTTCCTGTCC
GATCGCGGCA GCCTGACTGT GGACAACCGC ACCAACACTC TGCTGGTGCA GGACACCGAG
GCCAAGTTGG CAGATATCCG TCGTCTGATC GACCGGCTCG ACATTCCAGT CCAGCAGGTG
CTGATCGAGA CCCGCATCGT GATCGCCAGC GATGATTTCG CCCGTGACCT GGGCGCCCGC
TTTGGCGTGA CCGGCGTGGG GCAGACCGGG CGGACCCAGA CCTTCACCAC CGGCAACCTG
TCGGGTACCA CGGAGATGAT CCGGGGTGAC GAATTGAGTC TATTGAACCG CCTGAACACC
AACCTTCCCG TCATCTCACC CAGCGCCGGC AGCATCGCCC TGTCCATCCT GCGTCCCGAC
GTGCTGCTGG ACCTGGAGAT CTCCGCACTG CAAGTGGAAG GCCGCGGCGA GATCATCTCC
AGCCCGCGGG TGATCACCGC CAACGGCCAG ACCGCCCGCA TTCAGCAGGG TGAGCGCATC
CCCTACCAGG AGGCCACCTC AAGCGGCGCC ACAGCGGTAC AGTTCATCGA GGCTGTGCTG
GCCACGGAGG TCACCCCTCA GATCACCCCC AACGGCAACA TCATCCTCAA TATCAGGGTG
AACAAAGACA ACCCGGGCAC GCTGGTGGTG CAGGGCACCC CCTCCATCGA AACCCGCGAG
GTGGAGACCC AGGTGTTCGT GCGCAATGGC GAGACCGTGG TGCTGGGCGG TGTCTACGAG
ATCGACAGTC TGGAGACCCT GGAGAAGGTG CCCTTCTTTG GCGATCTGCC TGGCATCCGC
CACCTGTTCC GACGCACCGG CAAATCCACC CGCAAGGCGG AACTGCTGAT CTTCGTGACC
CCGAAGGTAA TCGAGGAGAC GGCCCTCAAC CGTTGA
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| Protein sequence | MRLATLTCLP HRNRTPVKAS GTGLMRNTIT FFALCLLLAA ISSPALAQGN VLERITYTTL
PGDRLQVTMG FASQPGEPTS FTIDNPARIA LDFPDTRIGL AQRNQDIGVG LARSISTAEA
RDRTRVVVNL VRMMAFETQV RGNELVLTLS PDAGAPAATA TQTAAAATAR AATGEIRISN
VDFRRGAEGE GRVVVHLTDP RTRVDVREQA GRIELNFLRT GLPEDLERRL DVIDFATPVQ
TIDTIRESDR VRMVVAATGR YDTLSYQVEN RYVLEVKPIT EAEAEEIQRD RFTYTGERLS
LNFQDIEVRS VLQLIADFTD LNVVVSDSVT GNITLRLRNV PWDQALDIIL RSKGLGMREA
GNVIFVAPTE EIAAREKLEM ESRKQVEELA PLRAEFIQVN YARADDVASI IRSDRTTFLS
DRGSLTVDNR TNTLLVQDTE AKLADIRRLI DRLDIPVQQV LIETRIVIAS DDFARDLGAR
FGVTGVGQTG RTQTFTTGNL SGTTEMIRGD ELSLLNRLNT NLPVISPSAG SIALSILRPD
VLLDLEISAL QVEGRGEIIS SPRVITANGQ TARIQQGERI PYQEATSSGA TAVQFIEAVL
ATEVTPQITP NGNIILNIRV NKDNPGTLVV QGTPSIETRE VETQVFVRNG ETVVLGGVYE
IDSLETLEKV PFFGDLPGIR HLFRRTGKST RKAELLIFVT PKVIEETALN R
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